Protein–RNA interactions for Protein: Q8CG47

Smc4, Structural maintenance of chromosomes protein 4, mousemouse

Predictions only

Length 1,286 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc4Q8CG47 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC28.23■■■□□ 2.11
Smc4Q8CG47 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC28.23■■■□□ 2.11
Smc4Q8CG47 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
Smc4Q8CG47 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC28.23■■■□□ 2.11
Smc4Q8CG47 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Smc4Q8CG47 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
Smc4Q8CG47 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC28.22■■■□□ 2.11
Smc4Q8CG47 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
Smc4Q8CG47 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC28.21■■■□□ 2.11
Smc4Q8CG47 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC28.21■■■□□ 2.11
Smc4Q8CG47 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC28.21■■■□□ 2.11
Smc4Q8CG47 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
Smc4Q8CG47 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
Smc4Q8CG47 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC28.2■■■□□ 2.11
Smc4Q8CG47 Gm7332-201ENSMUST00000118351 454 ntBASIC28.2■■■□□ 2.1
Smc4Q8CG47 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
Smc4Q8CG47 AC122428.3-201ENSMUST00000215551 2290 ntBASIC28.2■■■□□ 2.1
Smc4Q8CG47 Gm14523-201ENSMUST00000117260 558 ntBASIC28.19■■■□□ 2.1
Smc4Q8CG47 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC28.19■■■□□ 2.1
Smc4Q8CG47 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC28.19■■■□□ 2.1
Smc4Q8CG47 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC28.18■■■□□ 2.1
Smc4Q8CG47 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC28.18■■■□□ 2.1
Smc4Q8CG47 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Smc4Q8CG47 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
Smc4Q8CG47 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC28.17■■■□□ 2.1
Smc4Q8CG47 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
Smc4Q8CG47 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC28.15■■■□□ 2.1
Smc4Q8CG47 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC28.15■■■□□ 2.1
Smc4Q8CG47 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
Smc4Q8CG47 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC28.14■■■□□ 2.1
Smc4Q8CG47 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC28.14■■■□□ 2.1
Smc4Q8CG47 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC28.14■■■□□ 2.09
Smc4Q8CG47 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
Smc4Q8CG47 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Smc4Q8CG47 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC28.12■■■□□ 2.09
Smc4Q8CG47 Gm44428-201ENSMUST00000204474 874 ntBASIC28.12■■■□□ 2.09
Smc4Q8CG47 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC28.11■■■□□ 2.09
Smc4Q8CG47 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
Smc4Q8CG47 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC28.11■■■□□ 2.09
Smc4Q8CG47 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC28.1■■■□□ 2.09
Smc4Q8CG47 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
Smc4Q8CG47 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Smc4Q8CG47 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC28.09■■■□□ 2.09
Smc4Q8CG47 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
Smc4Q8CG47 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
Smc4Q8CG47 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
Smc4Q8CG47 AC151971.4-201ENSMUST00000214717 704 ntBASIC28.08■■■□□ 2.09
Smc4Q8CG47 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC28.08■■■□□ 2.09
Smc4Q8CG47 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
Smc4Q8CG47 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
Smc4Q8CG47 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
Smc4Q8CG47 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
Smc4Q8CG47 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
Smc4Q8CG47 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
Smc4Q8CG47 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC28.05■■■□□ 2.08
Smc4Q8CG47 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC28.05■■■□□ 2.08
Smc4Q8CG47 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC28.05■■■□□ 2.08
Smc4Q8CG47 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC28.05■■■□□ 2.08
Smc4Q8CG47 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC28.05■■■□□ 2.08
Smc4Q8CG47 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
Smc4Q8CG47 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
Smc4Q8CG47 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC28.04■■■□□ 2.08
Smc4Q8CG47 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC28.04■■■□□ 2.08
Smc4Q8CG47 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC28.03■■■□□ 2.08
Smc4Q8CG47 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
Smc4Q8CG47 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC28.03■■■□□ 2.08
Smc4Q8CG47 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC28.03■■■□□ 2.08
Smc4Q8CG47 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
Smc4Q8CG47 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
Smc4Q8CG47 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC28.03■■■□□ 2.08
Smc4Q8CG47 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
Smc4Q8CG47 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
Smc4Q8CG47 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
Smc4Q8CG47 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC28.02■■■□□ 2.08
Smc4Q8CG47 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
Smc4Q8CG47 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC28.02■■■□□ 2.08
Smc4Q8CG47 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
Smc4Q8CG47 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
Smc4Q8CG47 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC28.01■■■□□ 2.07
Smc4Q8CG47 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
Smc4Q8CG47 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC28■■■□□ 2.07
Smc4Q8CG47 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC27.99■■■□□ 2.07
Smc4Q8CG47 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC27.99■■■□□ 2.07
Smc4Q8CG47 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
Smc4Q8CG47 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
Smc4Q8CG47 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
Smc4Q8CG47 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
Smc4Q8CG47 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
Smc4Q8CG47 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
Smc4Q8CG47 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
Smc4Q8CG47 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC27.98■■■□□ 2.07
Smc4Q8CG47 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC27.97■■■□□ 2.07
Smc4Q8CG47 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
Smc4Q8CG47 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
Smc4Q8CG47 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
Smc4Q8CG47 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
Smc4Q8CG47 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC27.95■■■□□ 2.06
Smc4Q8CG47 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
Smc4Q8CG47 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
Smc4Q8CG47 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
Retrieved 100 of 76,532 protein–RNA pairs in 809.1 ms