Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Col11a1Q61245 Gm44428-201ENSMUST00000204474 874 ntBASIC26.62■■□□□ 1.85
Col11a1Q61245 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Col11a1Q61245 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC26.61■■□□□ 1.85
Col11a1Q61245 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
Col11a1Q61245 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC26.6■■□□□ 1.85
Col11a1Q61245 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Col11a1Q61245 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
Col11a1Q61245 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
Col11a1Q61245 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Col11a1Q61245 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC26.59■■□□□ 1.85
Col11a1Q61245 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC26.58■■□□□ 1.85
Col11a1Q61245 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
Col11a1Q61245 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Col11a1Q61245 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC26.58■■□□□ 1.85
Col11a1Q61245 Gm43592-201ENSMUST00000196922 1165 ntBASIC26.58■■□□□ 1.84
Col11a1Q61245 Gm45444-201ENSMUST00000211394 898 ntBASIC26.58■■□□□ 1.84
Col11a1Q61245 Rps24-207ENSMUST00000224568 714 ntBASIC26.58■■□□□ 1.84
Col11a1Q61245 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Col11a1Q61245 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Col11a1Q61245 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Col11a1Q61245 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC26.55■■□□□ 1.84
Col11a1Q61245 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC26.55■■□□□ 1.84
Col11a1Q61245 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC26.55■■□□□ 1.84
Col11a1Q61245 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC26.54■■□□□ 1.84
Col11a1Q61245 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC26.54■■□□□ 1.84
Col11a1Q61245 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC26.54■■□□□ 1.84
Col11a1Q61245 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC26.53■■□□□ 1.84
Col11a1Q61245 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Col11a1Q61245 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Col11a1Q61245 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC26.52■■□□□ 1.84
Col11a1Q61245 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
Col11a1Q61245 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
Col11a1Q61245 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Col11a1Q61245 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC26.49■■□□□ 1.83
Col11a1Q61245 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
Col11a1Q61245 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Col11a1Q61245 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Col11a1Q61245 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Col11a1Q61245 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC26.45■■□□□ 1.82
Col11a1Q61245 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC26.45■■□□□ 1.82
Col11a1Q61245 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Col11a1Q61245 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
Col11a1Q61245 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
Col11a1Q61245 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC26.44■■□□□ 1.82
Col11a1Q61245 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC26.44■■□□□ 1.82
Col11a1Q61245 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC26.44■■□□□ 1.82
Col11a1Q61245 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Col11a1Q61245 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Col11a1Q61245 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Col11a1Q61245 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Col11a1Q61245 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC26.42■■□□□ 1.82
Col11a1Q61245 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC26.42■■□□□ 1.82
Col11a1Q61245 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
Col11a1Q61245 Gm45102-201ENSMUST00000207427 857 ntBASIC26.42■■□□□ 1.82
Col11a1Q61245 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Col11a1Q61245 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC26.4■■□□□ 1.82
Col11a1Q61245 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC26.4■■□□□ 1.82
Col11a1Q61245 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC26.4■■□□□ 1.82
Col11a1Q61245 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC26.4■■□□□ 1.82
Col11a1Q61245 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Col11a1Q61245 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC26.39■■□□□ 1.82
Col11a1Q61245 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC26.39■■□□□ 1.81
Col11a1Q61245 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Col11a1Q61245 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC26.38■■□□□ 1.81
Col11a1Q61245 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC26.38■■□□□ 1.81
Col11a1Q61245 Nsd1-203ENSMUST00000224156 1149 ntBASIC26.38■■□□□ 1.81
Col11a1Q61245 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC26.37■■□□□ 1.81
Col11a1Q61245 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC26.37■■□□□ 1.81
Col11a1Q61245 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Col11a1Q61245 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Col11a1Q61245 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC26.35■■□□□ 1.81
Col11a1Q61245 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC26.35■■□□□ 1.81
Col11a1Q61245 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC26.35■■□□□ 1.81
Col11a1Q61245 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Col11a1Q61245 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Col11a1Q61245 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC26.34■■□□□ 1.81
Col11a1Q61245 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC26.34■■□□□ 1.81
Col11a1Q61245 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Col11a1Q61245 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Col11a1Q61245 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Col11a1Q61245 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC26.32■■□□□ 1.8
Col11a1Q61245 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
Col11a1Q61245 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Col11a1Q61245 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
Col11a1Q61245 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Col11a1Q61245 Gm9959-201ENSMUST00000068277 390 ntBASIC26.32■■□□□ 1.8
Col11a1Q61245 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC26.32■■□□□ 1.8
Col11a1Q61245 Zxda-201ENSMUST00000117281 2621 ntBASIC26.31■■□□□ 1.8
Col11a1Q61245 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Col11a1Q61245 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Col11a1Q61245 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Col11a1Q61245 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC26.3■■□□□ 1.8
Col11a1Q61245 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Col11a1Q61245 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Col11a1Q61245 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
Col11a1Q61245 Gm43445-201ENSMUST00000198564 2091 ntBASIC26.29■■□□□ 1.8
Col11a1Q61245 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC26.28■■□□□ 1.8
Col11a1Q61245 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Col11a1Q61245 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
Retrieved 100 of 76,532 protein–RNA pairs in 37.8 ms