Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Usf1Q61069 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC21.04■□□□□ 0.96
Usf1Q61069 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Usf1Q61069 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Usf1Q61069 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
Usf1Q61069 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Usf1Q61069 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Usf1Q61069 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
Usf1Q61069 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Usf1Q61069 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC21.02■□□□□ 0.96
Usf1Q61069 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC21.02■□□□□ 0.96
Usf1Q61069 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Usf1Q61069 Nsd1-203ENSMUST00000224156 1149 ntBASIC21.02■□□□□ 0.96
Usf1Q61069 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Usf1Q61069 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
Usf1Q61069 Gm37847-201ENSMUST00000192163 1497 ntBASIC21.01■□□□□ 0.95
Usf1Q61069 Gm31748-201ENSMUST00000194938 1497 ntBASIC21.01■□□□□ 0.95
Usf1Q61069 Gm43566-201ENSMUST00000196851 808 ntBASIC21.01■□□□□ 0.95
Usf1Q61069 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
Usf1Q61069 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Usf1Q61069 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC21.01■□□□□ 0.95
Usf1Q61069 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC21■□□□□ 0.95
Usf1Q61069 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Usf1Q61069 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
Usf1Q61069 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Usf1Q61069 Gm13238-201ENSMUST00000117655 780 ntBASIC21■□□□□ 0.95
Usf1Q61069 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC21■□□□□ 0.95
Usf1Q61069 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC21■□□□□ 0.95
Usf1Q61069 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC21■□□□□ 0.95
Usf1Q61069 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Usf1Q61069 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
Usf1Q61069 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usf1Q61069 Gm43592-201ENSMUST00000196922 1165 ntBASIC20.99■□□□□ 0.95
Usf1Q61069 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Usf1Q61069 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Usf1Q61069 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC20.98■□□□□ 0.95
Usf1Q61069 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Usf1Q61069 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Usf1Q61069 Zxda-201ENSMUST00000117281 2621 ntBASIC20.97■□□□□ 0.95
Usf1Q61069 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Usf1Q61069 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Usf1Q61069 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC20.97■□□□□ 0.95
Usf1Q61069 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Usf1Q61069 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
Usf1Q61069 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC20.96■□□□□ 0.95
Usf1Q61069 Gm45102-201ENSMUST00000207427 857 ntBASIC20.95■□□□□ 0.94
Usf1Q61069 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC20.95■□□□□ 0.94
Usf1Q61069 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Usf1Q61069 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Usf1Q61069 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Usf1Q61069 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
Usf1Q61069 Gm45444-201ENSMUST00000211394 898 ntBASIC20.94■□□□□ 0.94
Usf1Q61069 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Usf1Q61069 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usf1Q61069 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
Usf1Q61069 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Usf1Q61069 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC20.92■□□□□ 0.94
Usf1Q61069 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Usf1Q61069 Gm14117-201ENSMUST00000122417 843 ntBASIC20.91■□□□□ 0.94
Usf1Q61069 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Usf1Q61069 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Usf1Q61069 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Usf1Q61069 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usf1Q61069 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Usf1Q61069 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Usf1Q61069 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usf1Q61069 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usf1Q61069 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usf1Q61069 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC20.89■□□□□ 0.94
Usf1Q61069 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Usf1Q61069 Gm42501-201ENSMUST00000200220 1026 ntBASIC20.89■□□□□ 0.93
Usf1Q61069 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Usf1Q61069 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Usf1Q61069 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Usf1Q61069 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC20.88■□□□□ 0.93
Usf1Q61069 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC20.88■□□□□ 0.93
Usf1Q61069 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC20.88■□□□□ 0.93
Usf1Q61069 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Usf1Q61069 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usf1Q61069 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Usf1Q61069 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Usf1Q61069 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Usf1Q61069 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Usf1Q61069 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Usf1Q61069 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Usf1Q61069 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Usf1Q61069 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Usf1Q61069 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
Usf1Q61069 AC117769.4-201ENSMUST00000225679 685 ntBASIC20.85■□□□□ 0.93
Usf1Q61069 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Usf1Q61069 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Usf1Q61069 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC20.84■□□□□ 0.93
Usf1Q61069 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC20.83■□□□□ 0.93
Usf1Q61069 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Usf1Q61069 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Usf1Q61069 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
Usf1Q61069 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Usf1Q61069 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usf1Q61069 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Usf1Q61069 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC20.82■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms