Protein–RNA interactions for Protein: P97952

Scn1b, Sodium channel subunit beta-1, mousemouse

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn1bP97952 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scn1bP97952 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scn1bP97952 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC20.72■□□□□ 0.91
Scn1bP97952 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Scn1bP97952 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scn1bP97952 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scn1bP97952 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scn1bP97952 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Scn1bP97952 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
Scn1bP97952 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Scn1bP97952 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
Scn1bP97952 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC20.71■□□□□ 0.91
Scn1bP97952 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.91
Scn1bP97952 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Scn1bP97952 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Scn1bP97952 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Scn1bP97952 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Scn1bP97952 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Scn1bP97952 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Scn1bP97952 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Scn1bP97952 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Scn1bP97952 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Scn1bP97952 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Scn1bP97952 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Scn1bP97952 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Scn1bP97952 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Scn1bP97952 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Scn1bP97952 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC20.68■□□□□ 0.9
Scn1bP97952 Gm42699-201ENSMUST00000198104 1657 ntBASIC20.68■□□□□ 0.9
Scn1bP97952 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Scn1bP97952 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
Scn1bP97952 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Scn1bP97952 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Scn1bP97952 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Scn1bP97952 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Scn1bP97952 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC20.68■□□□□ 0.9
Scn1bP97952 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC20.67■□□□□ 0.9
Scn1bP97952 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Scn1bP97952 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Scn1bP97952 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Scn1bP97952 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Scn1bP97952 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Scn1bP97952 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
Scn1bP97952 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Scn1bP97952 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC20.66■□□□□ 0.9
Scn1bP97952 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Scn1bP97952 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Scn1bP97952 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scn1bP97952 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC20.65■□□□□ 0.9
Scn1bP97952 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scn1bP97952 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Scn1bP97952 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Scn1bP97952 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC20.64■□□□□ 0.89
Scn1bP97952 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Scn1bP97952 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Scn1bP97952 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC20.64■□□□□ 0.89
Scn1bP97952 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Scn1bP97952 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Scn1bP97952 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Scn1bP97952 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Scn1bP97952 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Scn1bP97952 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Scn1bP97952 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Scn1bP97952 Dmtn-209ENSMUST00000228295 2572 ntBASIC20.63■□□□□ 0.89
Scn1bP97952 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Scn1bP97952 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Scn1bP97952 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Scn1bP97952 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Scn1bP97952 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Scn1bP97952 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Scn1bP97952 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Scn1bP97952 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Scn1bP97952 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Scn1bP97952 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Scn1bP97952 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC20.62■□□□□ 0.89
Scn1bP97952 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Scn1bP97952 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Scn1bP97952 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC20.6■□□□□ 0.89
Scn1bP97952 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Scn1bP97952 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Scn1bP97952 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Scn1bP97952 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Scn1bP97952 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Scn1bP97952 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Scn1bP97952 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Scn1bP97952 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
Scn1bP97952 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Scn1bP97952 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Scn1bP97952 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Scn1bP97952 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Scn1bP97952 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC20.56■□□□□ 0.88
Scn1bP97952 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Scn1bP97952 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Scn1bP97952 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Scn1bP97952 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Scn1bP97952 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Scn1bP97952 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Scn1bP97952 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Scn1bP97952 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC20.54■□□□□ 0.88
Scn1bP97952 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 136.8 ms