Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.42
Col6a3E9PWQ3 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
Col6a3E9PWQ3 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC23.94■■□□□ 1.42
Col6a3E9PWQ3 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
Col6a3E9PWQ3 Flvcr1-202ENSMUST00000191946 1216 ntBASIC23.94■■□□□ 1.42
Col6a3E9PWQ3 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
Col6a3E9PWQ3 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Col6a3E9PWQ3 AC122317.2-201ENSMUST00000218708 1248 ntBASIC23.94■■□□□ 1.42
Col6a3E9PWQ3 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Col6a3E9PWQ3 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
Col6a3E9PWQ3 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Col6a3E9PWQ3 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC23.92■■□□□ 1.42
Col6a3E9PWQ3 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
Col6a3E9PWQ3 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Col6a3E9PWQ3 Gm8495-201ENSMUST00000188740 694 ntBASIC23.91■■□□□ 1.42
Col6a3E9PWQ3 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC23.91■■□□□ 1.42
Col6a3E9PWQ3 AC164629.5-201ENSMUST00000220387 632 ntBASIC23.91■■□□□ 1.42
Col6a3E9PWQ3 AC116713.1-201ENSMUST00000215074 430 ntBASIC23.9■■□□□ 1.42
Col6a3E9PWQ3 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
Col6a3E9PWQ3 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC23.9■■□□□ 1.42
Col6a3E9PWQ3 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC23.9■■□□□ 1.42
Col6a3E9PWQ3 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC23.9■■□□□ 1.42
Col6a3E9PWQ3 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Col6a3E9PWQ3 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC23.89■■□□□ 1.41
Col6a3E9PWQ3 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Col6a3E9PWQ3 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
Col6a3E9PWQ3 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC23.87■■□□□ 1.41
Col6a3E9PWQ3 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Col6a3E9PWQ3 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC23.87■■□□□ 1.41
Col6a3E9PWQ3 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC23.86■■□□□ 1.41
Col6a3E9PWQ3 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC23.86■■□□□ 1.41
Col6a3E9PWQ3 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC23.86■■□□□ 1.41
Col6a3E9PWQ3 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
Col6a3E9PWQ3 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
Col6a3E9PWQ3 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Col6a3E9PWQ3 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Col6a3E9PWQ3 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Col6a3E9PWQ3 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Col6a3E9PWQ3 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC23.85■■□□□ 1.41
Col6a3E9PWQ3 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC23.85■■□□□ 1.41
Col6a3E9PWQ3 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC23.85■■□□□ 1.41
Col6a3E9PWQ3 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC23.85■■□□□ 1.41
Col6a3E9PWQ3 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Col6a3E9PWQ3 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Col6a3E9PWQ3 Gm43592-201ENSMUST00000196922 1165 ntBASIC23.83■■□□□ 1.41
Col6a3E9PWQ3 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC23.83■■□□□ 1.41
Col6a3E9PWQ3 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Col6a3E9PWQ3 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC23.83■■□□□ 1.4
Col6a3E9PWQ3 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC23.83■■□□□ 1.4
Col6a3E9PWQ3 Gm37136-201ENSMUST00000194368 194 ntBASIC23.82■■□□□ 1.4
Col6a3E9PWQ3 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Col6a3E9PWQ3 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
Col6a3E9PWQ3 Gm2415-204ENSMUST00000190235 2004 ntBASIC23.82■■□□□ 1.4
Col6a3E9PWQ3 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC23.81■■□□□ 1.4
Col6a3E9PWQ3 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
Col6a3E9PWQ3 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Col6a3E9PWQ3 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC23.8■■□□□ 1.4
Col6a3E9PWQ3 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Col6a3E9PWQ3 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Col6a3E9PWQ3 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
Col6a3E9PWQ3 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC23.79■■□□□ 1.4
Col6a3E9PWQ3 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC23.79■■□□□ 1.4
Col6a3E9PWQ3 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
Col6a3E9PWQ3 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Col6a3E9PWQ3 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Col6a3E9PWQ3 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC23.78■■□□□ 1.4
Col6a3E9PWQ3 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Col6a3E9PWQ3 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
Col6a3E9PWQ3 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Col6a3E9PWQ3 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Col6a3E9PWQ3 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Col6a3E9PWQ3 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
Col6a3E9PWQ3 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
Col6a3E9PWQ3 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
Col6a3E9PWQ3 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Col6a3E9PWQ3 Gm9847-201ENSMUST00000052528 599 ntBASIC23.75■■□□□ 1.39
Col6a3E9PWQ3 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
Col6a3E9PWQ3 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
Col6a3E9PWQ3 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Col6a3E9PWQ3 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
Col6a3E9PWQ3 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Col6a3E9PWQ3 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
Col6a3E9PWQ3 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Col6a3E9PWQ3 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Col6a3E9PWQ3 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC23.73■■□□□ 1.39
Col6a3E9PWQ3 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Col6a3E9PWQ3 Gm18284-201ENSMUST00000172604 624 ntBASIC23.72■■□□□ 1.39
Col6a3E9PWQ3 Gm10232-201ENSMUST00000089221 720 ntBASIC23.72■■□□□ 1.39
Col6a3E9PWQ3 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Col6a3E9PWQ3 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Col6a3E9PWQ3 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Col6a3E9PWQ3 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Col6a3E9PWQ3 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
Col6a3E9PWQ3 Gm27011-201ENSMUST00000182352 972 ntBASIC23.7■■□□□ 1.38
Col6a3E9PWQ3 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC23.7■■□□□ 1.38
Col6a3E9PWQ3 Appbp2os-202ENSMUST00000206972 447 ntBASIC23.7■■□□□ 1.38
Col6a3E9PWQ3 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
Col6a3E9PWQ3 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC23.69■■□□□ 1.38
Col6a3E9PWQ3 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Col6a3E9PWQ3 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
Retrieved 100 of 76,532 protein–RNA pairs in 47.3 ms