Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC27.89■■■□□ 2.05
COL17A1Q9UMD9 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC27.89■■■□□ 2.05
COL17A1Q9UMD9 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.05
COL17A1Q9UMD9 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC27.89■■■□□ 2.05
COL17A1Q9UMD9 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC27.88■■■□□ 2.05
COL17A1Q9UMD9 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC27.88■■■□□ 2.05
COL17A1Q9UMD9 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
COL17A1Q9UMD9 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC27.88■■■□□ 2.05
COL17A1Q9UMD9 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC27.88■■■□□ 2.05
COL17A1Q9UMD9 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
COL17A1Q9UMD9 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
COL17A1Q9UMD9 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
COL17A1Q9UMD9 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC27.88■■■□□ 2.05
COL17A1Q9UMD9 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC27.88■■■□□ 2.05
COL17A1Q9UMD9 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC27.88■■■□□ 2.05
COL17A1Q9UMD9 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC27.88■■■□□ 2.05
COL17A1Q9UMD9 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC27.88■■■□□ 2.05
COL17A1Q9UMD9 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC27.88■■■□□ 2.05
COL17A1Q9UMD9 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC27.88■■■□□ 2.05
COL17A1Q9UMD9 RNF151-202ENST00000569210 853 ntTSL 2 BASIC27.88■■■□□ 2.05
COL17A1Q9UMD9 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC27.88■■■□□ 2.05
COL17A1Q9UMD9 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
COL17A1Q9UMD9 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC27.87■■■□□ 2.05
COL17A1Q9UMD9 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC27.87■■■□□ 2.05
COL17A1Q9UMD9 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC27.87■■■□□ 2.05
COL17A1Q9UMD9 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
COL17A1Q9UMD9 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC27.87■■■□□ 2.05
COL17A1Q9UMD9 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC27.87■■■□□ 2.05
COL17A1Q9UMD9 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC27.87■■■□□ 2.05
COL17A1Q9UMD9 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC27.87■■■□□ 2.05
COL17A1Q9UMD9 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC27.87■■■□□ 2.05
COL17A1Q9UMD9 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC27.87■■■□□ 2.05
COL17A1Q9UMD9 ANKRD20A8P-203ENST00000641373 517 ntBASIC27.87■■■□□ 2.05
COL17A1Q9UMD9 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC27.87■■■□□ 2.05
COL17A1Q9UMD9 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
COL17A1Q9UMD9 AL512408.1-201ENST00000569378 2000 ntBASIC27.87■■■□□ 2.05
COL17A1Q9UMD9 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC27.87■■■□□ 2.05
COL17A1Q9UMD9 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC27.87■■■□□ 2.05
COL17A1Q9UMD9 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC27.86■■■□□ 2.05
COL17A1Q9UMD9 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC27.86■■■□□ 2.05
COL17A1Q9UMD9 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
COL17A1Q9UMD9 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC27.86■■■□□ 2.05
COL17A1Q9UMD9 AC002310.6-201ENST00000624451 1377 ntBASIC27.86■■■□□ 2.05
COL17A1Q9UMD9 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC27.86■■■□□ 2.05
COL17A1Q9UMD9 LAGE3P1-201ENST00000425356 484 ntBASIC27.86■■■□□ 2.05
COL17A1Q9UMD9 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC27.86■■■□□ 2.05
COL17A1Q9UMD9 AL357033.4-201ENST00000617703 1807 ntBASIC27.86■■■□□ 2.05
COL17A1Q9UMD9 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC27.86■■■□□ 2.05
COL17A1Q9UMD9 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC27.86■■■□□ 2.05
COL17A1Q9UMD9 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC27.85■■■□□ 2.05
COL17A1Q9UMD9 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC27.85■■■□□ 2.05
COL17A1Q9UMD9 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC27.85■■■□□ 2.05
COL17A1Q9UMD9 C20orf181-201ENST00000623918 480 ntBASIC27.85■■■□□ 2.05
COL17A1Q9UMD9 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC27.85■■■□□ 2.05
COL17A1Q9UMD9 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC27.85■■■□□ 2.05
COL17A1Q9UMD9 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC27.85■■■□□ 2.05
COL17A1Q9UMD9 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC27.85■■■□□ 2.05
COL17A1Q9UMD9 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
COL17A1Q9UMD9 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC27.85■■■□□ 2.05
COL17A1Q9UMD9 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
COL17A1Q9UMD9 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
COL17A1Q9UMD9 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
COL17A1Q9UMD9 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
COL17A1Q9UMD9 COPE-202ENST00000349893 948 ntTSL 2 BASIC27.84■■■□□ 2.05
COL17A1Q9UMD9 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC27.84■■■□□ 2.05
COL17A1Q9UMD9 DANCR-204ENST00000444958 709 ntTSL 3 BASIC27.84■■■□□ 2.05
COL17A1Q9UMD9 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC27.84■■■□□ 2.05
COL17A1Q9UMD9 TAF8-206ENST00000472818 719 ntTSL 2 BASIC27.84■■■□□ 2.05
COL17A1Q9UMD9 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
COL17A1Q9UMD9 RBM7-207ENST00000544582 692 ntTSL 3 BASIC27.84■■■□□ 2.05
COL17A1Q9UMD9 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC27.84■■■□□ 2.05
COL17A1Q9UMD9 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC27.84■■■□□ 2.05
COL17A1Q9UMD9 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC27.84■■■□□ 2.05
COL17A1Q9UMD9 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC27.84■■■□□ 2.05
COL17A1Q9UMD9 AL035252.4-201ENST00000624174 288 ntBASIC27.84■■■□□ 2.05
COL17A1Q9UMD9 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC27.84■■■□□ 2.05
COL17A1Q9UMD9 LINC01521-201ENST00000504184 1943 ntBASIC27.84■■■□□ 2.05
COL17A1Q9UMD9 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
COL17A1Q9UMD9 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
COL17A1Q9UMD9 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
COL17A1Q9UMD9 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC27.83■■■□□ 2.05
COL17A1Q9UMD9 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC27.83■■■□□ 2.05
COL17A1Q9UMD9 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC27.83■■■□□ 2.05
COL17A1Q9UMD9 AC068472.1-201ENST00000474589 881 ntBASIC27.83■■■□□ 2.05
COL17A1Q9UMD9 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
COL17A1Q9UMD9 KRT8P32-201ENST00000512863 1461 ntBASIC27.83■■■□□ 2.05
COL17A1Q9UMD9 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC27.83■■■□□ 2.05
COL17A1Q9UMD9 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC27.83■■■□□ 2.05
COL17A1Q9UMD9 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
COL17A1Q9UMD9 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.04
COL17A1Q9UMD9 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.04
COL17A1Q9UMD9 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.04
COL17A1Q9UMD9 AC073621.1-201ENST00000392730 636 ntBASIC27.83■■■□□ 2.04
COL17A1Q9UMD9 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC27.83■■■□□ 2.04
COL17A1Q9UMD9 AL078644.1-201ENST00000609881 752 ntBASIC27.83■■■□□ 2.04
COL17A1Q9UMD9 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC27.83■■■□□ 2.04
COL17A1Q9UMD9 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
COL17A1Q9UMD9 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC27.82■■■□□ 2.04
COL17A1Q9UMD9 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
COL17A1Q9UMD9 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC27.82■■■□□ 2.04
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms