Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDHGA1Q9Y5H4 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.75■□□□□ 0.43
PCDHGA1Q9Y5H4 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC17.75■□□□□ 0.43
PCDHGA1Q9Y5H4 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
PCDHGA1Q9Y5H4 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PCDHGA1Q9Y5H4 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC17.75■□□□□ 0.43
PCDHGA1Q9Y5H4 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.75■□□□□ 0.43
PCDHGA1Q9Y5H4 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDHGA1Q9Y5H4 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC17.75■□□□□ 0.43
PCDHGA1Q9Y5H4 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PCDHGA1Q9Y5H4 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PCDHGA1Q9Y5H4 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDHGA1Q9Y5H4 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC17.75■□□□□ 0.43
PCDHGA1Q9Y5H4 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
PCDHGA1Q9Y5H4 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PCDHGA1Q9Y5H4 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC17.75■□□□□ 0.43
PCDHGA1Q9Y5H4 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PCDHGA1Q9Y5H4 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PCDHGA1Q9Y5H4 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC17.75■□□□□ 0.43
PCDHGA1Q9Y5H4 MIR5100-201ENST00000579544 119 ntBASIC17.75■□□□□ 0.43
PCDHGA1Q9Y5H4 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDHGA1Q9Y5H4 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDHGA1Q9Y5H4 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
PCDHGA1Q9Y5H4 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
PCDHGA1Q9Y5H4 FEM1AP3-201ENST00000403722 1741 ntBASIC17.75■□□□□ 0.43
PCDHGA1Q9Y5H4 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PCDHGA1Q9Y5H4 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 AC091607.1-201ENST00000490318 1060 ntBASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 SLC25A1P1-201ENST00000528351 927 ntBASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 AC106730.1-201ENST00000566722 1090 ntBASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 BNIP3P18-201ENST00000593976 575 ntBASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 ABBA01031661.1-201ENST00000634362 1253 ntBASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.74■□□□□ 0.43
PCDHGA1Q9Y5H4 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PCDHGA1Q9Y5H4 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDHGA1Q9Y5H4 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
PCDHGA1Q9Y5H4 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDHGA1Q9Y5H4 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.73■□□□□ 0.43
PCDHGA1Q9Y5H4 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.73■□□□□ 0.43
PCDHGA1Q9Y5H4 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDHGA1Q9Y5H4 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDHGA1Q9Y5H4 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PCDHGA1Q9Y5H4 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PCDHGA1Q9Y5H4 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC17.73■□□□□ 0.43
PCDHGA1Q9Y5H4 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
PCDHGA1Q9Y5H4 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
PCDHGA1Q9Y5H4 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.73■□□□□ 0.43
PCDHGA1Q9Y5H4 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.73■□□□□ 0.43
PCDHGA1Q9Y5H4 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.73■□□□□ 0.43
PCDHGA1Q9Y5H4 AC114341.1-201ENST00000618070 349 ntBASIC17.73■□□□□ 0.43
PCDHGA1Q9Y5H4 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PCDHGA1Q9Y5H4 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDHGA1Q9Y5H4 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC17.73■□□□□ 0.43
PCDHGA1Q9Y5H4 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDHGA1Q9Y5H4 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PCDHGA1Q9Y5H4 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
PCDHGA1Q9Y5H4 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDHGA1Q9Y5H4 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 USP39-204ENST00000409766 2033 ntTSL 2 BASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms