Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC18.38■□□□□ 0.53
CXCL12P48061 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC18.38■□□□□ 0.53
CXCL12P48061 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CXCL12P48061 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CXCL12P48061 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CXCL12P48061 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CXCL12P48061 AC104109.2-201ENST00000602919 1418 ntBASIC18.38■□□□□ 0.53
CXCL12P48061 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CXCL12P48061 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CXCL12P48061 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CXCL12P48061 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC18.38■□□□□ 0.53
CXCL12P48061 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CXCL12P48061 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CXCL12P48061 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CXCL12P48061 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CXCL12P48061 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CXCL12P48061 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
CXCL12P48061 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CXCL12P48061 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CXCL12P48061 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC18.37■□□□□ 0.53
CXCL12P48061 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC18.37■□□□□ 0.53
CXCL12P48061 DANCR-204ENST00000444958 709 ntTSL 3 BASIC18.37■□□□□ 0.53
CXCL12P48061 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC18.37■□□□□ 0.53
CXCL12P48061 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC18.37■□□□□ 0.53
CXCL12P48061 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC18.37■□□□□ 0.53
CXCL12P48061 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CXCL12P48061 AC005336.2-201ENST00000593183 939 ntBASIC18.37■□□□□ 0.53
CXCL12P48061 AP001269.4-201ENST00000609611 512 ntBASIC18.37■□□□□ 0.53
CXCL12P48061 FAM197Y3-203ENST00000618346 717 ntBASIC18.37■□□□□ 0.53
CXCL12P48061 AC055717.3-201ENST00000622967 595 ntBASIC18.37■□□□□ 0.53
CXCL12P48061 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CXCL12P48061 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CXCL12P48061 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CXCL12P48061 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CXCL12P48061 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CXCL12P48061 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC18.37■□□□□ 0.53
CXCL12P48061 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CXCL12P48061 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CXCL12P48061 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CXCL12P48061 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.37■□□□□ 0.53
CXCL12P48061 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.37■□□□□ 0.53
CXCL12P48061 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CXCL12P48061 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18.37■□□□□ 0.53
CXCL12P48061 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CXCL12P48061 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CXCL12P48061 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.37■□□□□ 0.53
CXCL12P48061 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CXCL12P48061 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CXCL12P48061 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CXCL12P48061 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CXCL12P48061 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CXCL12P48061 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CXCL12P48061 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CXCL12P48061 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC18.36■□□□□ 0.53
CXCL12P48061 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CXCL12P48061 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CXCL12P48061 IGHV3-22-201ENST00000520721 359 ntBASIC18.36■□□□□ 0.53
CXCL12P48061 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.36■□□□□ 0.53
CXCL12P48061 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CXCL12P48061 CD63-204ENST00000546939 779 ntTSL 3 BASIC18.36■□□□□ 0.53
CXCL12P48061 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC18.36■□□□□ 0.53
CXCL12P48061 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC18.36■□□□□ 0.53
CXCL12P48061 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC18.36■□□□□ 0.53
CXCL12P48061 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.36■□□□□ 0.53
CXCL12P48061 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
CXCL12P48061 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC18.36■□□□□ 0.53
CXCL12P48061 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC18.36■□□□□ 0.53
CXCL12P48061 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
CXCL12P48061 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CXCL12P48061 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CXCL12P48061 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.35■□□□□ 0.53
CXCL12P48061 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.35■□□□□ 0.53
CXCL12P48061 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC18.35■□□□□ 0.53
CXCL12P48061 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CXCL12P48061 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CXCL12P48061 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CXCL12P48061 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
CXCL12P48061 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CXCL12P48061 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CXCL12P48061 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CXCL12P48061 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC18.35■□□□□ 0.53
CXCL12P48061 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CXCL12P48061 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CXCL12P48061 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CXCL12P48061 CSF3-203ENST00000394148 622 ntTSL 3 BASIC18.35■□□□□ 0.53
CXCL12P48061 UPF3AP3-201ENST00000420996 769 ntBASIC18.35■□□□□ 0.53
CXCL12P48061 MED15P5-201ENST00000423150 992 ntBASIC18.35■□□□□ 0.53
CXCL12P48061 AC068472.1-201ENST00000474589 881 ntBASIC18.35■□□□□ 0.53
CXCL12P48061 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CXCL12P48061 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CXCL12P48061 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CXCL12P48061 AL356488.2-201ENST00000602755 427 ntBASIC18.35■□□□□ 0.53
CXCL12P48061 AL139424.1-201ENST00000607572 797 ntBASIC18.35■□□□□ 0.53
CXCL12P48061 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CXCL12P48061 LINC01006-201ENST00000333319 2292 ntBASIC18.35■□□□□ 0.53
CXCL12P48061 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CXCL12P48061 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CXCL12P48061 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
CXCL12P48061 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
CXCL12P48061 HLA-J-201ENST00000462773 1622 ntBASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms