Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGN4O00479 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC17.24■□□□□ 0.35
HMGN4O00479 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.24■□□□□ 0.35
HMGN4O00479 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.24■□□□□ 0.35
HMGN4O00479 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.24■□□□□ 0.35
HMGN4O00479 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGN4O00479 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HMGN4O00479 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
HMGN4O00479 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
HMGN4O00479 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.23■□□□□ 0.35
HMGN4O00479 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HMGN4O00479 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGN4O00479 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.23■□□□□ 0.35
HMGN4O00479 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HMGN4O00479 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HMGN4O00479 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGN4O00479 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGN4O00479 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGN4O00479 RBM17P1-201ENST00000453646 1190 ntBASIC17.23■□□□□ 0.35
HMGN4O00479 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC17.23■□□□□ 0.35
HMGN4O00479 AC008550.1-201ENST00000511500 884 ntBASIC17.23■□□□□ 0.35
HMGN4O00479 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC17.23■□□□□ 0.35
HMGN4O00479 AL023803.3-201ENST00000615559 522 ntBASIC17.23■□□□□ 0.35
HMGN4O00479 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.23■□□□□ 0.35
HMGN4O00479 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGN4O00479 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.23■□□□□ 0.35
HMGN4O00479 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HMGN4O00479 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.23■□□□□ 0.35
HMGN4O00479 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGN4O00479 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGN4O00479 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGN4O00479 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGN4O00479 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.23■□□□□ 0.35
HMGN4O00479 AC036111.1-201ENST00000533973 1582 ntBASIC17.23■□□□□ 0.35
HMGN4O00479 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
HMGN4O00479 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.22■□□□□ 0.35
HMGN4O00479 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGN4O00479 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HMGN4O00479 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
HMGN4O00479 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
HMGN4O00479 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
HMGN4O00479 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.22■□□□□ 0.35
HMGN4O00479 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HMGN4O00479 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
HMGN4O00479 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGN4O00479 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.22■□□□□ 0.35
HMGN4O00479 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGN4O00479 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.22■□□□□ 0.35
HMGN4O00479 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGN4O00479 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HMGN4O00479 UNC93B2-201ENST00000285383 730 ntBASIC17.22■□□□□ 0.35
HMGN4O00479 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGN4O00479 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGN4O00479 TSPY7P-201ENST00000431358 1114 ntBASIC17.22■□□□□ 0.35
HMGN4O00479 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGN4O00479 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC17.22■□□□□ 0.35
HMGN4O00479 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC17.22■□□□□ 0.35
HMGN4O00479 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.22■□□□□ 0.35
HMGN4O00479 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.22■□□□□ 0.35
HMGN4O00479 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
HMGN4O00479 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGN4O00479 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGN4O00479 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGN4O00479 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.22■□□□□ 0.35
HMGN4O00479 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGN4O00479 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
HMGN4O00479 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HMGN4O00479 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGN4O00479 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGN4O00479 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC17.22■□□□□ 0.35
HMGN4O00479 LETM1P2-201ENST00000597330 2178 ntBASIC17.22■□□□□ 0.35
HMGN4O00479 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HMGN4O00479 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGN4O00479 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
HMGN4O00479 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGN4O00479 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGN4O00479 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HMGN4O00479 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.21■□□□□ 0.35
HMGN4O00479 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HMGN4O00479 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGN4O00479 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.21■□□□□ 0.35
HMGN4O00479 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
HMGN4O00479 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.21■□□□□ 0.35
HMGN4O00479 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
HMGN4O00479 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGN4O00479 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.21■□□□□ 0.35
HMGN4O00479 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGN4O00479 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGN4O00479 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.21■□□□□ 0.35
HMGN4O00479 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGN4O00479 MIR718-201ENST00000390190 70 ntBASIC17.21■□□□□ 0.35
HMGN4O00479 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HMGN4O00479 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC17.21■□□□□ 0.35
HMGN4O00479 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC17.21■□□□□ 0.35
HMGN4O00479 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC17.21■□□□□ 0.35
HMGN4O00479 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC17.21■□□□□ 0.35
HMGN4O00479 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGN4O00479 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
HMGN4O00479 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.21■□□□□ 0.35
HMGN4O00479 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms