Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gm43332-201ENSMUST00000202511 1044 ntBASIC17.54■□□□□ 0.4
Ushbp1Q8R370 Gm10060-201ENSMUST00000212002 111 ntBASIC17.54■□□□□ 0.4
Ushbp1Q8R370 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ushbp1Q8R370 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
Ushbp1Q8R370 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ushbp1Q8R370 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ushbp1Q8R370 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC17.54■□□□□ 0.4
Ushbp1Q8R370 Zkscan3-208ENSMUST00000224820 5398 ntBASIC17.54■□□□□ 0.4
Ushbp1Q8R370 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ushbp1Q8R370 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ushbp1Q8R370 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ushbp1Q8R370 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ushbp1Q8R370 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Ushbp1Q8R370 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ushbp1Q8R370 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ushbp1Q8R370 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ushbp1Q8R370 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ushbp1Q8R370 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ushbp1Q8R370 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ushbp1Q8R370 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ushbp1Q8R370 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC17.53■□□□□ 0.4
Ushbp1Q8R370 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ushbp1Q8R370 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC17.53■□□□□ 0.4
Ushbp1Q8R370 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC17.53■□□□□ 0.4
Ushbp1Q8R370 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC17.53■□□□□ 0.4
Ushbp1Q8R370 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Ushbp1Q8R370 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC17.53■□□□□ 0.4
Ushbp1Q8R370 Gm8349-201ENSMUST00000182720 1003 ntBASIC17.53■□□□□ 0.4
Ushbp1Q8R370 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC17.53■□□□□ 0.4
Ushbp1Q8R370 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC17.53■□□□□ 0.4
Ushbp1Q8R370 Gm5364-201ENSMUST00000216789 889 ntBASIC17.53■□□□□ 0.4
Ushbp1Q8R370 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ushbp1Q8R370 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Ushbp1Q8R370 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ushbp1Q8R370 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC17.53■□□□□ 0.4
Ushbp1Q8R370 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Ushbp1Q8R370 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Ushbp1Q8R370 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ushbp1Q8R370 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Ushbp1Q8R370 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ushbp1Q8R370 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC17.52■□□□□ 0.4
Ushbp1Q8R370 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ushbp1Q8R370 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Ushbp1Q8R370 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Ushbp1Q8R370 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Ushbp1Q8R370 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC17.52■□□□□ 0.4
Ushbp1Q8R370 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ushbp1Q8R370 Gm12350-201ENSMUST00000121208 462 ntBASIC17.52■□□□□ 0.4
Ushbp1Q8R370 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC17.52■□□□□ 0.4
Ushbp1Q8R370 Gm25406-201ENSMUST00000157599 105 ntBASIC17.52■□□□□ 0.4
Ushbp1Q8R370 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC17.52■□□□□ 0.4
Ushbp1Q8R370 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC17.52■□□□□ 0.4
Ushbp1Q8R370 Gm13830-205ENSMUST00000201195 1155 ntBASIC17.52■□□□□ 0.4
Ushbp1Q8R370 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ushbp1Q8R370 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Ushbp1Q8R370 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Ushbp1Q8R370 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.4
Ushbp1Q8R370 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ushbp1Q8R370 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
Ushbp1Q8R370 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Ushbp1Q8R370 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC17.52■□□□□ 0.39
Ushbp1Q8R370 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
Ushbp1Q8R370 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Ushbp1Q8R370 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Ushbp1Q8R370 AC154231.1-201ENSMUST00000220564 2175 ntBASIC17.52■□□□□ 0.39
Ushbp1Q8R370 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Ushbp1Q8R370 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Ushbp1Q8R370 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Ushbp1Q8R370 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
Ushbp1Q8R370 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ushbp1Q8R370 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ushbp1Q8R370 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC17.51■□□□□ 0.39
Ushbp1Q8R370 Gm2213-201ENSMUST00000197485 688 ntBASIC17.51■□□□□ 0.39
Ushbp1Q8R370 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC17.51■□□□□ 0.39
Ushbp1Q8R370 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC17.51■□□□□ 0.39
Ushbp1Q8R370 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ushbp1Q8R370 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ushbp1Q8R370 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ushbp1Q8R370 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ushbp1Q8R370 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ushbp1Q8R370 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC17.51■□□□□ 0.39
Ushbp1Q8R370 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ushbp1Q8R370 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ushbp1Q8R370 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Ushbp1Q8R370 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC17.51■□□□□ 0.39
Ushbp1Q8R370 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ushbp1Q8R370 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Ushbp1Q8R370 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Ushbp1Q8R370 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ushbp1Q8R370 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Ushbp1Q8R370 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ushbp1Q8R370 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ushbp1Q8R370 Gm27528-202ENSMUST00000222916 2012 ntBASIC17.5■□□□□ 0.39
Ushbp1Q8R370 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC17.5■□□□□ 0.39
Ushbp1Q8R370 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC17.5■□□□□ 0.39
Ushbp1Q8R370 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ushbp1Q8R370 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ushbp1Q8R370 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ushbp1Q8R370 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ushbp1Q8R370 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 26.3 ms