Protein–RNA interactions for Protein: Q38HM4

Trim63, E3 ubiquitin-protein ligase TRIM63, mousemouse

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim63Q38HM4 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trim63Q38HM4 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trim63Q38HM4 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trim63Q38HM4 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trim63Q38HM4 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trim63Q38HM4 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trim63Q38HM4 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC13.02□□□□□ -0.32
Trim63Q38HM4 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC13.02□□□□□ -0.32
Trim63Q38HM4 Gm21451-201ENSMUST00000111062 2775 ntBASIC13.02□□□□□ -0.32
Trim63Q38HM4 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Trim63Q38HM4 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trim63Q38HM4 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim63Q38HM4 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim63Q38HM4 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC13.02□□□□□ -0.33
Trim63Q38HM4 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Trim63Q38HM4 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Trim63Q38HM4 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Trim63Q38HM4 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim63Q38HM4 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim63Q38HM4 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC13.02□□□□□ -0.33
Trim63Q38HM4 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim63Q38HM4 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC13.02□□□□□ -0.33
Trim63Q38HM4 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim63Q38HM4 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim63Q38HM4 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Trim63Q38HM4 Gm42829-201ENSMUST00000198417 2585 ntBASIC13.02□□□□□ -0.33
Trim63Q38HM4 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim63Q38HM4 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Trim63Q38HM4 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim63Q38HM4 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trim63Q38HM4 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim63Q38HM4 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trim63Q38HM4 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC13.01□□□□□ -0.33
Trim63Q38HM4 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim63Q38HM4 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim63Q38HM4 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Trim63Q38HM4 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim63Q38HM4 Dcaf7-201ENSMUST00000058438 5750 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim63Q38HM4 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trim63Q38HM4 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim63Q38HM4 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim63Q38HM4 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim63Q38HM4 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim63Q38HM4 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim63Q38HM4 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC13.01□□□□□ -0.33
Trim63Q38HM4 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim63Q38HM4 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trim63Q38HM4 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim63Q38HM4 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim63Q38HM4 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim63Q38HM4 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim63Q38HM4 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trim63Q38HM4 Rims1-205ENSMUST00000097811 6446 ntAPPRIS P5 TSL 5 BASIC13□□□□□ -0.33
Trim63Q38HM4 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim63Q38HM4 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trim63Q38HM4 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim63Q38HM4 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim63Q38HM4 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Trim63Q38HM4 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
Trim63Q38HM4 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trim63Q38HM4 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Trim63Q38HM4 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC13□□□□□ -0.33
Trim63Q38HM4 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Trim63Q38HM4 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC13□□□□□ -0.33
Trim63Q38HM4 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim63Q38HM4 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim63Q38HM4 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC13□□□□□ -0.33
Trim63Q38HM4 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Trim63Q38HM4 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trim63Q38HM4 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
Trim63Q38HM4 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
Trim63Q38HM4 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim63Q38HM4 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trim63Q38HM4 Gm22238-201ENSMUST00000175222 88 ntBASIC13□□□□□ -0.33
Trim63Q38HM4 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC13□□□□□ -0.33
Trim63Q38HM4 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim63Q38HM4 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Trim63Q38HM4 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC13□□□□□ -0.33
Trim63Q38HM4 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim63Q38HM4 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim63Q38HM4 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Trim63Q38HM4 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim63Q38HM4 Plcb1-202ENSMUST00000110116 7003 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim63Q38HM4 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trim63Q38HM4 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trim63Q38HM4 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Trim63Q38HM4 Slc22a15-201ENSMUST00000106928 6573 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Trim63Q38HM4 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trim63Q38HM4 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim63Q38HM4 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim63Q38HM4 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Trim63Q38HM4 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trim63Q38HM4 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim63Q38HM4 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim63Q38HM4 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim63Q38HM4 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim63Q38HM4 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim63Q38HM4 Gm45504-201ENSMUST00000211407 2107 ntBASIC12.99□□□□□ -0.33
Trim63Q38HM4 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim63Q38HM4 Adamts20-204ENSMUST00000155907 6886 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms