Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 COX10-202ENST00000429152 875 ntTSL 2 BASIC19.86■□□□□ 0.77
COL4A4P53420 FAM197Y8-203ENST00000450145 560 ntBASIC19.86■□□□□ 0.77
COL4A4P53420 MOK-208ENST00000519058 917 ntTSL 2 BASIC19.86■□□□□ 0.77
COL4A4P53420 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A4P53420 AC106730.1-201ENST00000566722 1090 ntBASIC19.86■□□□□ 0.77
COL4A4P53420 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A4P53420 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A4P53420 AC010327.4-202ENST00000591484 748 ntBASIC19.86■□□□□ 0.77
COL4A4P53420 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC19.86■□□□□ 0.77
COL4A4P53420 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC19.86■□□□□ 0.77
COL4A4P53420 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC19.86■□□□□ 0.77
COL4A4P53420 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A4P53420 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.86■□□□□ 0.77
COL4A4P53420 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A4P53420 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A4P53420 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC19.86■□□□□ 0.77
COL4A4P53420 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A4P53420 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A4P53420 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A4P53420 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A4P53420 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
COL4A4P53420 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC19.85■□□□□ 0.77
COL4A4P53420 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
COL4A4P53420 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
COL4A4P53420 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC19.85■□□□□ 0.77
COL4A4P53420 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC19.85■□□□□ 0.77
COL4A4P53420 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A4P53420 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A4P53420 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A4P53420 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
COL4A4P53420 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A4P53420 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A4P53420 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A4P53420 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC19.85■□□□□ 0.77
COL4A4P53420 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A4P53420 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A4P53420 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC19.84■□□□□ 0.77
COL4A4P53420 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC19.84■□□□□ 0.77
COL4A4P53420 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.84■□□□□ 0.77
COL4A4P53420 RNPS1P1-201ENST00000507437 918 ntBASIC19.84■□□□□ 0.77
COL4A4P53420 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A4P53420 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC19.84■□□□□ 0.77
COL4A4P53420 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC19.84■□□□□ 0.77
COL4A4P53420 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC19.84■□□□□ 0.77
COL4A4P53420 TERC-201ENST00000602385 541 ntBASIC19.84■□□□□ 0.77
COL4A4P53420 AC124864.1-201ENST00000623408 392 ntBASIC19.84■□□□□ 0.77
COL4A4P53420 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A4P53420 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A4P53420 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A4P53420 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A4P53420 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A4P53420 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A4P53420 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A4P53420 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A4P53420 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
COL4A4P53420 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.84■□□□□ 0.77
COL4A4P53420 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A4P53420 IGHGP-201ENST00000390555 1178 ntBASIC19.84■□□□□ 0.77
COL4A4P53420 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC19.84■□□□□ 0.77
COL4A4P53420 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC19.84■□□□□ 0.77
COL4A4P53420 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
COL4A4P53420 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A4P53420 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC19.84■□□□□ 0.77
COL4A4P53420 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.83■□□□□ 0.77
COL4A4P53420 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL4A4P53420 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
COL4A4P53420 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A4P53420 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A4P53420 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC19.83■□□□□ 0.76
COL4A4P53420 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC19.83■□□□□ 0.76
COL4A4P53420 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC19.83■□□□□ 0.76
COL4A4P53420 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A4P53420 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A4P53420 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A4P53420 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A4P53420 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A4P53420 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A4P53420 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC19.83■□□□□ 0.76
COL4A4P53420 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC19.83■□□□□ 0.76
COL4A4P53420 AL161938.1-201ENST00000569833 2180 ntBASIC19.83■□□□□ 0.76
COL4A4P53420 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.83■□□□□ 0.76
COL4A4P53420 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A4P53420 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.82■□□□□ 0.76
COL4A4P53420 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A4P53420 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC19.82■□□□□ 0.76
COL4A4P53420 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC19.82■□□□□ 0.76
COL4A4P53420 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A4P53420 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
COL4A4P53420 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19.82■□□□□ 0.76
COL4A4P53420 PGAM5P1-201ENST00000518923 814 ntBASIC19.82■□□□□ 0.76
COL4A4P53420 CCNC-219ENST00000627680 896 ntTSL 5 BASIC19.82■□□□□ 0.76
COL4A4P53420 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A4P53420 AC007952.6-201ENST00000573168 2673 ntBASIC19.82■□□□□ 0.76
COL4A4P53420 AC003957.1-201ENST00000625108 2673 ntBASIC19.82■□□□□ 0.76
COL4A4P53420 KRT8P3-201ENST00000519669 1449 ntBASIC19.82■□□□□ 0.76
COL4A4P53420 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A4P53420 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A4P53420 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC19.82■□□□□ 0.76
COL4A4P53420 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A4P53420 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms