Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sdc1P18828 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sdc1P18828 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sdc1P18828 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC12.99□□□□□ -0.33
Sdc1P18828 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sdc1P18828 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC12.99□□□□□ -0.33
Sdc1P18828 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sdc1P18828 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Sdc1P18828 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC12.99□□□□□ -0.33
Sdc1P18828 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sdc1P18828 Gm12134-201ENSMUST00000122109 520 ntBASIC12.99□□□□□ -0.33
Sdc1P18828 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sdc1P18828 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sdc1P18828 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sdc1P18828 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Sdc1P18828 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sdc1P18828 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Sdc1P18828 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sdc1P18828 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC12.99□□□□□ -0.33
Sdc1P18828 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sdc1P18828 Gm43697-201ENSMUST00000199637 2581 ntBASIC12.99□□□□□ -0.33
Sdc1P18828 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sdc1P18828 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sdc1P18828 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Sdc1P18828 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Sdc1P18828 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Sdc1P18828 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Sdc1P18828 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Sdc1P18828 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC12.98□□□□□ -0.33
Sdc1P18828 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC12.98□□□□□ -0.33
Sdc1P18828 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Sdc1P18828 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Sdc1P18828 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Sdc1P18828 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Sdc1P18828 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Sdc1P18828 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Sdc1P18828 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Sdc1P18828 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Sdc1P18828 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Sdc1P18828 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Sdc1P18828 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Sdc1P18828 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Sdc1P18828 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Sdc1P18828 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC12.98□□□□□ -0.33
Sdc1P18828 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Sdc1P18828 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC12.98□□□□□ -0.33
Sdc1P18828 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC12.98□□□□□ -0.33
Sdc1P18828 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Sdc1P18828 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
Sdc1P18828 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Sdc1P18828 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Sdc1P18828 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Sdc1P18828 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Sdc1P18828 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC12.98□□□□□ -0.33
Sdc1P18828 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Sdc1P18828 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Sdc1P18828 Actl10-202ENSMUST00000226583 1501 ntBASIC12.98□□□□□ -0.33
Sdc1P18828 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Sdc1P18828 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sdc1P18828 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sdc1P18828 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sdc1P18828 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC12.97□□□□□ -0.33
Sdc1P18828 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sdc1P18828 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC12.97□□□□□ -0.33
Sdc1P18828 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
Sdc1P18828 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sdc1P18828 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sdc1P18828 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sdc1P18828 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Sdc1P18828 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC12.97□□□□□ -0.33
Sdc1P18828 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sdc1P18828 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC12.97□□□□□ -0.33
Sdc1P18828 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Sdc1P18828 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sdc1P18828 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Sdc1P18828 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Sdc1P18828 Gm10517-202ENSMUST00000192970 758 ntBASIC12.97□□□□□ -0.33
Sdc1P18828 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC12.97□□□□□ -0.33
Sdc1P18828 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Sdc1P18828 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sdc1P18828 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sdc1P18828 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sdc1P18828 AC167013.2-201ENSMUST00000228520 2684 ntBASIC12.97□□□□□ -0.33
Sdc1P18828 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Sdc1P18828 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sdc1P18828 Gm5357-201ENSMUST00000212720 1924 ntBASIC12.97□□□□□ -0.33
Sdc1P18828 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sdc1P18828 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sdc1P18828 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
Sdc1P18828 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sdc1P18828 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sdc1P18828 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sdc1P18828 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sdc1P18828 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
Sdc1P18828 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sdc1P18828 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Sdc1P18828 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Sdc1P18828 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Sdc1P18828 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC12.96□□□□□ -0.33
Sdc1P18828 Gm43399-201ENSMUST00000202546 2374 ntBASIC12.96□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms