Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Smc1aQ9CU62 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Smc1aQ9CU62 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Smc1aQ9CU62 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Smc1aQ9CU62 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Smc1aQ9CU62 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Smc1aQ9CU62 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
Smc1aQ9CU62 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Smc1aQ9CU62 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Smc1aQ9CU62 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Smc1aQ9CU62 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Smc1aQ9CU62 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Smc1aQ9CU62 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
Smc1aQ9CU62 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC17.67■□□□□ 0.42
Smc1aQ9CU62 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Smc1aQ9CU62 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Smc1aQ9CU62 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC17.67■□□□□ 0.42
Smc1aQ9CU62 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Smc1aQ9CU62 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Smc1aQ9CU62 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Smc1aQ9CU62 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Smc1aQ9CU62 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Smc1aQ9CU62 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Smc1aQ9CU62 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Smc1aQ9CU62 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC17.67■□□□□ 0.42
Smc1aQ9CU62 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Smc1aQ9CU62 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Smc1aQ9CU62 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Smc1aQ9CU62 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Smc1aQ9CU62 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Smc1aQ9CU62 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Smc1aQ9CU62 AC154412.1-201ENSMUST00000226540 2786 ntBASIC17.67■□□□□ 0.42
Smc1aQ9CU62 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Smc1aQ9CU62 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Smc1aQ9CU62 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 Gm44616-201ENSMUST00000206417 1732 ntBASIC17.66■□□□□ 0.42
Smc1aQ9CU62 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 Zkscan4-202ENSMUST00000225845 1506 ntBASIC17.66■□□□□ 0.42
Smc1aQ9CU62 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Smc1aQ9CU62 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Smc1aQ9CU62 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Smc1aQ9CU62 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Smc1aQ9CU62 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Smc1aQ9CU62 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Smc1aQ9CU62 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC17.65■□□□□ 0.42
Smc1aQ9CU62 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Smc1aQ9CU62 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Smc1aQ9CU62 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Smc1aQ9CU62 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Smc1aQ9CU62 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Smc1aQ9CU62 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Smc1aQ9CU62 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Smc1aQ9CU62 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Smc1aQ9CU62 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC17.65■□□□□ 0.42
Smc1aQ9CU62 Prob1-201ENSMUST00000097619 3021 ntBASIC17.65■□□□□ 0.42
Smc1aQ9CU62 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Smc1aQ9CU62 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
Smc1aQ9CU62 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Smc1aQ9CU62 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Smc1aQ9CU62 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Smc1aQ9CU62 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Smc1aQ9CU62 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.42
Smc1aQ9CU62 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.42
Smc1aQ9CU62 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
Smc1aQ9CU62 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Smc1aQ9CU62 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Smc1aQ9CU62 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
Smc1aQ9CU62 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Smc1aQ9CU62 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Smc1aQ9CU62 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 49.5 ms