Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 ASAH1-215ENST00000635769 575 ntTSL 420.3■□□□□ 0.845e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-239ENST00000636920 1989 ntTSL 520.16■□□□□ 0.825e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-244ENST00000637202 1634 ntTSL 520.04■□□□□ 0.85e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-212ENST00000523593 586 ntTSL 519.97■□□□□ 0.795e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-216ENST00000635944 1960 ntTSL 519.89■□□□□ 0.775e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-205ENST00000518087 918 ntTSL 519.84■□□□□ 0.775e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC19.28■□□□□ 0.685e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-236ENST00000636815 1724 ntTSL 519.12■□□□□ 0.655e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC18.88■□□□□ 0.615e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-233ENST00000636701 2158 ntTSL 518.68■□□□□ 0.585e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-217ENST00000635998 1845 ntTSL 518.56■□□□□ 0.565e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.495e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC17.98■□□□□ 0.475e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-243ENST00000637095 2048 ntTSL 517.92■□□□□ 0.465e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC17.56■□□□□ 0.45e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-207ENST00000519468 746 ntTSL 317.02■□□□□ 0.325e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.35e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-228ENST00000636494 1975 ntTSL 516.88■□□□□ 0.295e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-222ENST00000636160 2328 ntTSL 516.78■□□□□ 0.285e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.72■□□□□ 0.275e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC16.47■□□□□ 0.235e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-241ENST00000637013 2649 ntTSL 516.24■□□□□ 0.195e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-247ENST00000637429 2558 ntTSL 515.11■□□□□ 0.015e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.015e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-245ENST00000637244 3151 ntTSL 1 (best)14.87□□□□□ -0.035e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-202ENST00000314146 1690 ntTSL 1 (best) BASIC12.65□□□□□ -0.385e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-269ENST00000638069 3068 ntTSL 512.31□□□□□ -0.445e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-226ENST00000636435 4611 ntTSL 211.37□□□□□ -0.595e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-229ENST00000636537 1056 ntTSL 2 BASIC11.02□□□□□ -0.655e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-225ENST00000636299 543 ntTSL 410.88□□□□□ -0.675e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-248ENST00000637484 2304 ntTSL 59.39□□□□□ -0.915e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-234ENST00000636715 1025 ntTSL 58.83□□□□□ -15e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-203ENST00000381733 2512 ntTSL 1 (best) BASIC8.82□□□□□ -15e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-213ENST00000523744 5740 nt8.66□□□□□ -1.025e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-220ENST00000636050 2546 ntTSL 58.29□□□□□ -1.085e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-227ENST00000636455 1777 ntTSL 5 BASIC8.21□□□□□ -1.15e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-260ENST00000637805 780 ntTSL 57.87□□□□□ -1.155e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-267ENST00000637991 2399 ntTSL 5 BASIC7.85□□□□□ -1.155e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-253ENST00000637609 4981 ntTSL 57.81□□□□□ -1.165e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-237ENST00000636823 571 ntTSL 47.54□□□□□ -1.25e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-218ENST00000636009 2148 ntTSL 57.12□□□□□ -1.275e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-256ENST00000637718 662 ntTSL 57.06□□□□□ -1.285e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC6.99□□□□□ -1.295e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC6.95□□□□□ -1.35e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC6.7□□□□□ -1.345e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-238ENST00000636828 3365 ntTSL 25.8□□□□□ -1.485e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-262ENST00000637857 2585 ntTSL 55.64□□□□□ -1.515e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.42□□□□□ -1.75e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-208ENST00000519545 771 ntTSL 34.05□□□□□ -1.765e-11■□□□□ 11.1
DDX55Q8NHQ9 ERF-202ENST00000440177 2032 ntTSL 2 BASIC23.2■■□□□ 1.38e-7■□□□□ 11.1
DDX55Q8NHQ9 MIEN1-202ENST00000469568 825 ntTSL 225.16■■□□□ 1.621e-7■□□□□ 11.1
DDX55Q8NHQ9 MIEN1-204ENST00000498164 925 ntTSL 225.16■■□□□ 1.621e-7■□□□□ 11.1
DDX55Q8NHQ9 CD63-211ENST00000551173 788 ntTSL 325■■□□□ 1.591e-7■□□□□ 11.1
DDX55Q8NHQ9 CD63-213ENST00000552164 845 ntTSL 224.43■■□□□ 1.51e-7■□□□□ 11.1
DDX55Q8NHQ9 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.321e-7■□□□□ 11.1
DDX55Q8NHQ9 KLHDC2-207ENST00000555443 1756 ntTSL 223.13■■□□□ 1.291e-7■□□□□ 11.1
DDX55Q8NHQ9 KLHDC2-208ENST00000555739 1696 ntTSL 522.92■■□□□ 1.261e-7■□□□□ 11.1
DDX55Q8NHQ9 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.111e-7■□□□□ 11.1
DDX55Q8NHQ9 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC21.59■■□□□ 1.051e-7■□□□□ 11.1
DDX55Q8NHQ9 MIEN1-206ENST00000582963 1999 nt21.38■■□□□ 1.011e-7■□□□□ 11.1
DDX55Q8NHQ9 SRC-206ENST00000472968 461 ntTSL 320.77■□□□□ 0.921e-7■□□□□ 11.1
DDX55Q8NHQ9 MIEN1-203ENST00000474210 706 ntTSL 220.62■□□□□ 0.891e-7■□□□□ 11.1
DDX55Q8NHQ9 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC18.29■□□□□ 0.521e-7■□□□□ 11.1
DDX55Q8NHQ9 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC17.82■□□□□ 0.441e-7■□□□□ 11.1
DDX55Q8NHQ9 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.371e-7■□□□□ 11.1
DDX55Q8NHQ9 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC16.77■□□□□ 0.281e-7■□□□□ 11.1
DDX55Q8NHQ9 PHB-210ENST00000511832 1509 ntTSL 2 BASIC16.6■□□□□ 0.251e-7■□□□□ 11.1
DDX55Q8NHQ9 FHOD1-209ENST00000569085 735 ntTSL 216.4■□□□□ 0.221e-7■□□□□ 11.1
DDX55Q8NHQ9 SORD-206ENST00000559562 864 ntTSL 516.19■□□□□ 0.181e-7■□□□□ 11.1
DDX55Q8NHQ9 PEX5-214ENST00000541850 386 ntTSL 316.06■□□□□ 0.161e-7■□□□□ 11.1
DDX55Q8NHQ9 FHOD1-207ENST00000567752 4321 ntTSL 215.81■□□□□ 0.121e-7■□□□□ 11.1
DDX55Q8NHQ9 PHB-206ENST00000504124 796 ntTSL 515.5■□□□□ 0.071e-7■□□□□ 11.1
DDX55Q8NHQ9 KLHDC2-211ENST00000557247 1565 ntTSL 5 BASIC15.24■□□□□ 0.031e-7■□□□□ 11.1
DDX55Q8NHQ9 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.011e-7■□□□□ 11.1
DDX55Q8NHQ9 PEX5-201ENST00000266563 3252 ntTSL 1 (best) BASIC14.64□□□□□ -0.071e-7■□□□□ 11.1
DDX55Q8NHQ9 PHB-214ENST00000614445 1952 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.11e-7■□□□□ 11.1
DDX55Q8NHQ9 PHB-215ENST00000617874 1908 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.161e-7■□□□□ 11.1
DDX55Q8NHQ9 MPZL2-201ENST00000278937 2620 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.161e-7■□□□□ 11.1
DDX55Q8NHQ9 SORD-205ENST00000559230 1502 ntTSL 1 (best)13.98□□□□□ -0.171e-7■□□□□ 11.1
DDX55Q8NHQ9 PHB-202ENST00000393345 847 ntTSL 213.4□□□□□ -0.261e-7■□□□□ 11.1
DDX55Q8NHQ9 FHOD1-201ENST00000258201 3990 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.271e-7■□□□□ 11.1
DDX55Q8NHQ9 PHB-213ENST00000513412 650 ntTSL 212.84□□□□□ -0.351e-7■□□□□ 11.1
DDX55Q8NHQ9 PHB-204ENST00000434917 534 ntTSL 412.58□□□□□ -0.41e-7■□□□□ 11.1
DDX55Q8NHQ9 PHB-207ENST00000506273 431 ntTSL 512.54□□□□□ -0.41e-7■□□□□ 11.1
DDX55Q8NHQ9 SORD-203ENST00000558580 1395 ntTSL 5 BASIC12.3□□□□□ -0.441e-7■□□□□ 11.1
DDX55Q8NHQ9 MPZL2-207ENST00000534175 1317 ntTSL 511.56□□□□□ -0.561e-7■□□□□ 11.1
DDX55Q8NHQ9 PHB-203ENST00000419140 907 ntTSL 511.53□□□□□ -0.561e-7■□□□□ 11.1
DDX55Q8NHQ9 PHB-212ENST00000512041 694 ntTSL 311.53□□□□□ -0.561e-7■□□□□ 11.1
DDX55Q8NHQ9 PHB-205ENST00000446735 732 ntTSL 511.29□□□□□ -0.61e-7■□□□□ 11.1
DDX55Q8NHQ9 PEX5-202ENST00000266564 3170 ntTSL 1 (best) BASIC11.16□□□□□ -0.621e-7■□□□□ 11.1
DDX55Q8NHQ9 SORD-201ENST00000267814 4909 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.651e-7■□□□□ 11.1
DDX55Q8NHQ9 KLHDC2-210ENST00000557063 827 ntTSL 26.14□□□□□ -1.431e-7■□□□□ 11.1
DDX55Q8NHQ9 KLHDC2-209ENST00000556559 751 ntTSL 56.14□□□□□ -1.431e-7■□□□□ 11.1
DDX55Q8NHQ9 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.96■□□□□ 0.632e-6■□□□□ 11.1
DDX55Q8NHQ9 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC31.29■■■□□ 2.69e-7■□□□□ 11.1
DDX55Q8NHQ9 DCXR-220ENST00000585085 927 ntTSL 529.53■■■□□ 2.321e-15■□□□□ 11.1
DDX55Q8NHQ9 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.354e-7■□□□□ 11.1
DDX55Q8NHQ9 RABL6-205ENST00000435930 3328 ntTSL 215.83■□□□□ 0.134e-7■□□□□ 11.1
DDX55Q8NHQ9 RABL6-207ENST00000461992 763 ntTSL 1 (best)15.58■□□□□ 0.084e-7■□□□□ 11.1
DDX55Q8NHQ9 TPI1-204ENST00000474253 427 ntTSL 1 (best)14.16□□□□□ -0.145e-22■□□□□ 11.1
Retrieved 100 of 15,504 protein–RNA pairs in 173.6 ms