Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS35Q96QK1 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
VPS35Q96QK1 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.57■□□□□ 0.56
VPS35Q96QK1 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
VPS35Q96QK1 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VPS35Q96QK1 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS35Q96QK1 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.57■□□□□ 0.56
VPS35Q96QK1 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS35Q96QK1 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS35Q96QK1 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS35Q96QK1 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
VPS35Q96QK1 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS35Q96QK1 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS35Q96QK1 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.56■□□□□ 0.56
VPS35Q96QK1 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
VPS35Q96QK1 AC036111.1-201ENST00000533973 1582 ntBASIC18.56■□□□□ 0.56
VPS35Q96QK1 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS35Q96QK1 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.56■□□□□ 0.56
VPS35Q96QK1 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS35Q96QK1 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS35Q96QK1 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.56■□□□□ 0.56
VPS35Q96QK1 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VPS35Q96QK1 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS35Q96QK1 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS35Q96QK1 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.56■□□□□ 0.56
VPS35Q96QK1 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC18.56■□□□□ 0.56
VPS35Q96QK1 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VPS35Q96QK1 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC18.56■□□□□ 0.56
VPS35Q96QK1 TK2-213ENST00000563369 882 ntTSL 5 BASIC18.56■□□□□ 0.56
VPS35Q96QK1 NEK4P2-201ENST00000580004 1012 ntBASIC18.56■□□□□ 0.56
VPS35Q96QK1 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.56■□□□□ 0.56
VPS35Q96QK1 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS35Q96QK1 AC141257.4-201ENST00000634557 245 ntBASIC18.56■□□□□ 0.56
VPS35Q96QK1 AC136944.6-201ENST00000634818 245 ntBASIC18.56■□□□□ 0.56
VPS35Q96QK1 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.56■□□□□ 0.56
VPS35Q96QK1 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.56■□□□□ 0.56
VPS35Q96QK1 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.56■□□□□ 0.56
VPS35Q96QK1 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS35Q96QK1 AC026471.1-201ENST00000564629 3026 ntBASIC18.56■□□□□ 0.56
VPS35Q96QK1 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VPS35Q96QK1 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS35Q96QK1 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VPS35Q96QK1 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS35Q96QK1 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS35Q96QK1 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VPS35Q96QK1 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
VPS35Q96QK1 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.55■□□□□ 0.56
VPS35Q96QK1 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
VPS35Q96QK1 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VPS35Q96QK1 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS35Q96QK1 MTMR9LP-203ENST00000426597 1545 ntBASIC18.55■□□□□ 0.56
VPS35Q96QK1 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
VPS35Q96QK1 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS35Q96QK1 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VPS35Q96QK1 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS35Q96QK1 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC18.55■□□□□ 0.56
VPS35Q96QK1 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC18.55■□□□□ 0.56
VPS35Q96QK1 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
VPS35Q96QK1 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS35Q96QK1 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS35Q96QK1 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS35Q96QK1 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS35Q96QK1 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS35Q96QK1 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VPS35Q96QK1 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.55■□□□□ 0.56
VPS35Q96QK1 AC018445.3-201ENST00000624177 1945 ntBASIC18.55■□□□□ 0.56
VPS35Q96QK1 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.54■□□□□ 0.56
VPS35Q96QK1 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VPS35Q96QK1 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS35Q96QK1 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS35Q96QK1 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18.54■□□□□ 0.56
VPS35Q96QK1 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC18.54■□□□□ 0.56
VPS35Q96QK1 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.54■□□□□ 0.56
VPS35Q96QK1 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VPS35Q96QK1 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS35Q96QK1 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS35Q96QK1 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
VPS35Q96QK1 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS35Q96QK1 MIR564-202ENST00000385049 94 ntBASIC18.54■□□□□ 0.56
VPS35Q96QK1 AP000523.1-201ENST00000398242 1049 ntBASIC18.54■□□□□ 0.56
VPS35Q96QK1 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.54■□□□□ 0.56
VPS35Q96QK1 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
VPS35Q96QK1 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC18.54■□□□□ 0.56
VPS35Q96QK1 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
VPS35Q96QK1 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC18.54■□□□□ 0.56
VPS35Q96QK1 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
VPS35Q96QK1 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS35Q96QK1 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS35Q96QK1 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.54■□□□□ 0.56
VPS35Q96QK1 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS35Q96QK1 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VPS35Q96QK1 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS35Q96QK1 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
VPS35Q96QK1 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
VPS35Q96QK1 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC18.53■□□□□ 0.56
VPS35Q96QK1 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
VPS35Q96QK1 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC18.53■□□□□ 0.56
VPS35Q96QK1 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.53■□□□□ 0.56
VPS35Q96QK1 BX664615.1-201ENST00000443558 458 ntBASIC18.53■□□□□ 0.56
VPS35Q96QK1 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms