Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
NOD1Q9Y239 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC20.64■□□□□ 0.9
NOD1Q9Y239 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
NOD1Q9Y239 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.9
NOD1Q9Y239 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.64■□□□□ 0.9
NOD1Q9Y239 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
NOD1Q9Y239 AL157384.1-201ENST00000445995 2473 ntBASIC20.64■□□□□ 0.9
NOD1Q9Y239 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NOD1Q9Y239 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
NOD1Q9Y239 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NOD1Q9Y239 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NOD1Q9Y239 UBC-206ENST00000538617 1303 ntTSL 5 BASIC20.64■□□□□ 0.89
NOD1Q9Y239 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
NOD1Q9Y239 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
NOD1Q9Y239 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
NOD1Q9Y239 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC20.64■□□□□ 0.89
NOD1Q9Y239 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC20.64■□□□□ 0.89
NOD1Q9Y239 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC20.64■□□□□ 0.89
NOD1Q9Y239 AC104390.1-201ENST00000555663 520 ntBASIC20.64■□□□□ 0.89
NOD1Q9Y239 MPI-205ENST00000562606 1052 ntTSL 3 BASIC20.64■□□□□ 0.89
NOD1Q9Y239 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC20.64■□□□□ 0.89
NOD1Q9Y239 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC20.64■□□□□ 0.89
NOD1Q9Y239 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
NOD1Q9Y239 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC20.64■□□□□ 0.89
NOD1Q9Y239 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
NOD1Q9Y239 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NOD1Q9Y239 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NOD1Q9Y239 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
NOD1Q9Y239 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC20.64■□□□□ 0.89
NOD1Q9Y239 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NOD1Q9Y239 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NOD1Q9Y239 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NOD1Q9Y239 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NOD1Q9Y239 TSPY19P-201ENST00000418461 509 ntBASIC20.63■□□□□ 0.89
NOD1Q9Y239 ELP6-205ENST00000439305 880 ntTSL 2 BASIC20.63■□□□□ 0.89
NOD1Q9Y239 TSPY18P-201ENST00000441642 509 ntBASIC20.63■□□□□ 0.89
NOD1Q9Y239 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC20.63■□□□□ 0.89
NOD1Q9Y239 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC20.63■□□□□ 0.89
NOD1Q9Y239 AP003733.1-201ENST00000491725 852 ntBASIC20.63■□□□□ 0.89
NOD1Q9Y239 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NOD1Q9Y239 FOSL1P1-201ENST00000511041 816 ntBASIC20.63■□□□□ 0.89
NOD1Q9Y239 AC012615.1-201ENST00000565797 1299 ntBASIC20.63■□□□□ 0.89
NOD1Q9Y239 TBCB-205ENST00000585746 875 ntTSL 3 BASIC20.63■□□□□ 0.89
NOD1Q9Y239 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NOD1Q9Y239 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.63■□□□□ 0.89
NOD1Q9Y239 HCG11-201ENST00000411553 5696 ntBASIC20.63■□□□□ 0.89
NOD1Q9Y239 TP73-202ENST00000354437 2140 ntTSL 5 BASIC20.63■□□□□ 0.89
NOD1Q9Y239 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
NOD1Q9Y239 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NOD1Q9Y239 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
NOD1Q9Y239 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NOD1Q9Y239 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC20.63■□□□□ 0.89
NOD1Q9Y239 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC20.62■□□□□ 0.89
NOD1Q9Y239 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NOD1Q9Y239 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.62■□□□□ 0.89
NOD1Q9Y239 HOXB1-202ENST00000577092 1414 ntBASIC20.62■□□□□ 0.89
NOD1Q9Y239 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC20.62■□□□□ 0.89
NOD1Q9Y239 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NOD1Q9Y239 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
NOD1Q9Y239 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
NOD1Q9Y239 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
NOD1Q9Y239 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NOD1Q9Y239 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NOD1Q9Y239 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC20.62■□□□□ 0.89
NOD1Q9Y239 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NOD1Q9Y239 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC20.62■□□□□ 0.89
NOD1Q9Y239 EMBP1-201ENST00000458200 901 ntBASIC20.62■□□□□ 0.89
NOD1Q9Y239 AC104819.1-201ENST00000504587 486 ntBASIC20.62■□□□□ 0.89
NOD1Q9Y239 AC090616.6-201ENST00000582640 721 ntBASIC20.62■□□□□ 0.89
NOD1Q9Y239 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC20.62■□□□□ 0.89
NOD1Q9Y239 IGHV3-41-201ENST00000613121 348 ntBASIC20.62■□□□□ 0.89
NOD1Q9Y239 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
NOD1Q9Y239 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
NOD1Q9Y239 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.62■□□□□ 0.89
NOD1Q9Y239 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NOD1Q9Y239 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.62■□□□□ 0.89
NOD1Q9Y239 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NOD1Q9Y239 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NOD1Q9Y239 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NOD1Q9Y239 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
NOD1Q9Y239 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NOD1Q9Y239 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
NOD1Q9Y239 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
NOD1Q9Y239 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NOD1Q9Y239 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NOD1Q9Y239 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NOD1Q9Y239 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
NOD1Q9Y239 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC20.61■□□□□ 0.89
NOD1Q9Y239 AC005332.3-201ENST00000589904 676 ntBASIC20.61■□□□□ 0.89
NOD1Q9Y239 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
NOD1Q9Y239 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NOD1Q9Y239 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.61■□□□□ 0.89
NOD1Q9Y239 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC20.61■□□□□ 0.89
NOD1Q9Y239 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NOD1Q9Y239 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
NOD1Q9Y239 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NOD1Q9Y239 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NOD1Q9Y239 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NOD1Q9Y239 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NOD1Q9Y239 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms