Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VTA1Q9NP79 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VTA1Q9NP79 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.97■□□□□ 0.95
VTA1Q9NP79 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VTA1Q9NP79 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VTA1Q9NP79 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
VTA1Q9NP79 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VTA1Q9NP79 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VTA1Q9NP79 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
VTA1Q9NP79 AC004870.1-201ENST00000315132 882 ntBASIC20.97■□□□□ 0.95
VTA1Q9NP79 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VTA1Q9NP79 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC20.97■□□□□ 0.95
VTA1Q9NP79 LINC00265-3P-201ENST00000447588 903 ntBASIC20.97■□□□□ 0.95
VTA1Q9NP79 AC090616.6-201ENST00000582640 721 ntBASIC20.97■□□□□ 0.95
VTA1Q9NP79 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VTA1Q9NP79 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC20.97■□□□□ 0.95
VTA1Q9NP79 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VTA1Q9NP79 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VTA1Q9NP79 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VTA1Q9NP79 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VTA1Q9NP79 CYP51A1P1-201ENST00000492267 1507 ntBASIC20.97■□□□□ 0.95
VTA1Q9NP79 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
VTA1Q9NP79 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VTA1Q9NP79 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VTA1Q9NP79 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.97■□□□□ 0.95
VTA1Q9NP79 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VTA1Q9NP79 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC20.96■□□□□ 0.95
VTA1Q9NP79 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
VTA1Q9NP79 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VTA1Q9NP79 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VTA1Q9NP79 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
VTA1Q9NP79 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VTA1Q9NP79 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VTA1Q9NP79 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VTA1Q9NP79 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC20.96■□□□□ 0.95
VTA1Q9NP79 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
VTA1Q9NP79 TBCB-205ENST00000585746 875 ntTSL 3 BASIC20.96■□□□□ 0.95
VTA1Q9NP79 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC20.96■□□□□ 0.95
VTA1Q9NP79 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC20.96■□□□□ 0.95
VTA1Q9NP79 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
VTA1Q9NP79 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC20.96■□□□□ 0.95
VTA1Q9NP79 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VTA1Q9NP79 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC20.96■□□□□ 0.95
VTA1Q9NP79 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VTA1Q9NP79 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VTA1Q9NP79 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VTA1Q9NP79 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.95■□□□□ 0.95
VTA1Q9NP79 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.95■□□□□ 0.94
VTA1Q9NP79 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
VTA1Q9NP79 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VTA1Q9NP79 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VTA1Q9NP79 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
VTA1Q9NP79 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VTA1Q9NP79 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
VTA1Q9NP79 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
VTA1Q9NP79 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VTA1Q9NP79 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VTA1Q9NP79 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
VTA1Q9NP79 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC20.95■□□□□ 0.94
VTA1Q9NP79 FAAHP1-202ENST00000446499 1238 ntBASIC20.95■□□□□ 0.94
VTA1Q9NP79 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
VTA1Q9NP79 TOB2P1-201ENST00000469761 992 ntBASIC20.95■□□□□ 0.94
VTA1Q9NP79 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC20.95■□□□□ 0.94
VTA1Q9NP79 UNC93B7-201ENST00000509439 705 ntBASIC20.95■□□□□ 0.94
VTA1Q9NP79 AP000867.3-201ENST00000524675 377 ntBASIC20.95■□□□□ 0.94
VTA1Q9NP79 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC20.95■□□□□ 0.94
VTA1Q9NP79 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC20.95■□□□□ 0.94
VTA1Q9NP79 AC009065.1-201ENST00000564055 1225 ntBASIC20.95■□□□□ 0.94
VTA1Q9NP79 AC012615.1-201ENST00000565797 1299 ntBASIC20.95■□□□□ 0.94
VTA1Q9NP79 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VTA1Q9NP79 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC20.95■□□□□ 0.94
VTA1Q9NP79 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC20.95■□□□□ 0.94
VTA1Q9NP79 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VTA1Q9NP79 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VTA1Q9NP79 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.95■□□□□ 0.94
VTA1Q9NP79 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VTA1Q9NP79 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VTA1Q9NP79 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VTA1Q9NP79 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.94■□□□□ 0.94
VTA1Q9NP79 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC20.94■□□□□ 0.94
VTA1Q9NP79 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
VTA1Q9NP79 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VTA1Q9NP79 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VTA1Q9NP79 TSPY19P-201ENST00000418461 509 ntBASIC20.94■□□□□ 0.94
VTA1Q9NP79 AL845331.1-201ENST00000424978 1190 ntBASIC20.94■□□□□ 0.94
VTA1Q9NP79 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
VTA1Q9NP79 TSPY18P-201ENST00000441642 509 ntBASIC20.94■□□□□ 0.94
VTA1Q9NP79 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC20.94■□□□□ 0.94
VTA1Q9NP79 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
VTA1Q9NP79 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC20.94■□□□□ 0.94
VTA1Q9NP79 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
VTA1Q9NP79 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.94■□□□□ 0.94
VTA1Q9NP79 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC20.94■□□□□ 0.94
VTA1Q9NP79 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC20.94■□□□□ 0.94
VTA1Q9NP79 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VTA1Q9NP79 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC20.93■□□□□ 0.94
VTA1Q9NP79 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VTA1Q9NP79 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
VTA1Q9NP79 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VTA1Q9NP79 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms