Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC31.38■■■□□ 2.61
CUX1P39880 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC31.38■■■□□ 2.61
CUX1P39880 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC31.38■■■□□ 2.61
CUX1P39880 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC31.37■■■□□ 2.61
CUX1P39880 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC31.37■■■□□ 2.61
CUX1P39880 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC31.37■■■□□ 2.61
CUX1P39880 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
CUX1P39880 HES2-202ENST00000377836 507 ntTSL 2 BASIC31.37■■■□□ 2.61
CUX1P39880 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
CUX1P39880 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC31.37■■■□□ 2.61
CUX1P39880 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
CUX1P39880 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
CUX1P39880 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
CUX1P39880 MOK-208ENST00000519058 917 ntTSL 2 BASIC31.37■■■□□ 2.61
CUX1P39880 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
CUX1P39880 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC31.37■■■□□ 2.61
CUX1P39880 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
CUX1P39880 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
CUX1P39880 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
CUX1P39880 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
CUX1P39880 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
CUX1P39880 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC31.37■■■□□ 2.61
CUX1P39880 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC31.37■■■□□ 2.61
CUX1P39880 UBQLN4P1-201ENST00000461599 1801 ntBASIC31.37■■■□□ 2.61
CUX1P39880 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
CUX1P39880 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
CUX1P39880 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC31.36■■■□□ 2.61
CUX1P39880 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC31.36■■■□□ 2.61
CUX1P39880 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC31.36■■■□□ 2.61
CUX1P39880 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
CUX1P39880 KRT18P13-201ENST00000400056 1290 ntBASIC31.36■■■□□ 2.61
CUX1P39880 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC31.36■■■□□ 2.61
CUX1P39880 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC31.36■■■□□ 2.61
CUX1P39880 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC31.36■■■□□ 2.61
CUX1P39880 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC31.36■■■□□ 2.61
CUX1P39880 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC31.36■■■□□ 2.61
CUX1P39880 AL049840.3-201ENST00000602669 611 ntBASIC31.36■■■□□ 2.61
CUX1P39880 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
CUX1P39880 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
CUX1P39880 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC31.36■■■□□ 2.61
CUX1P39880 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
CUX1P39880 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
CUX1P39880 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC31.35■■■□□ 2.61
CUX1P39880 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC31.35■■■□□ 2.61
CUX1P39880 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC31.35■■■□□ 2.61
CUX1P39880 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
CUX1P39880 MED22-202ENST00000371999 987 ntTSL 3 BASIC31.35■■■□□ 2.61
CUX1P39880 AL031284.1-201ENST00000419297 478 ntBASIC31.35■■■□□ 2.61
CUX1P39880 RPP21-221ENST00000428040 594 ntTSL 2 BASIC31.35■■■□□ 2.61
CUX1P39880 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
CUX1P39880 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC31.35■■■□□ 2.61
CUX1P39880 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC31.35■■■□□ 2.61
CUX1P39880 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
CUX1P39880 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
CUX1P39880 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
CUX1P39880 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
CUX1P39880 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC31.35■■■□□ 2.61
CUX1P39880 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
CUX1P39880 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC31.34■■■□□ 2.61
CUX1P39880 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
CUX1P39880 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC31.34■■■□□ 2.61
CUX1P39880 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC31.34■■■□□ 2.61
CUX1P39880 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC31.34■■■□□ 2.61
CUX1P39880 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC31.34■■■□□ 2.61
CUX1P39880 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC31.34■■■□□ 2.61
CUX1P39880 AC114341.1-201ENST00000618070 349 ntBASIC31.34■■■□□ 2.61
CUX1P39880 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
CUX1P39880 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC31.34■■■□□ 2.61
CUX1P39880 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
CUX1P39880 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC31.34■■■□□ 2.61
CUX1P39880 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC31.34■■■□□ 2.61
CUX1P39880 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC31.34■■■□□ 2.61
CUX1P39880 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC31.34■■■□□ 2.61
CUX1P39880 FEM1AP3-201ENST00000403722 1741 ntBASIC31.34■■■□□ 2.61
CUX1P39880 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC31.34■■■□□ 2.61
CUX1P39880 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC31.34■■■□□ 2.61
CUX1P39880 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC31.34■■■□□ 2.61
CUX1P39880 FAM197Y8-203ENST00000450145 560 ntBASIC31.34■■■□□ 2.61
CUX1P39880 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC31.34■■■□□ 2.61
CUX1P39880 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
CUX1P39880 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
CUX1P39880 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC31.33■■■□□ 2.61
CUX1P39880 AL357033.4-201ENST00000617703 1807 ntBASIC31.33■■■□□ 2.61
CUX1P39880 Z98044.1-201ENST00000632503 1764 ntBASIC31.33■■■□□ 2.61
CUX1P39880 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC31.33■■■□□ 2.61
CUX1P39880 LINC01006-201ENST00000333319 2292 ntBASIC31.33■■■□□ 2.61
CUX1P39880 AC096582.2-201ENST00000510860 516 ntBASIC31.33■■■□□ 2.61
CUX1P39880 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC31.33■■■□□ 2.61
CUX1P39880 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
CUX1P39880 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
CUX1P39880 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC31.33■■■□□ 2.61
CUX1P39880 AC008608.2-201ENST00000606089 416 ntBASIC31.33■■■□□ 2.61
CUX1P39880 AC117500.6-201ENST00000624871 588 ntBASIC31.33■■■□□ 2.61
CUX1P39880 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC31.33■■■□□ 2.61
CUX1P39880 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
CUX1P39880 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC31.32■■■□□ 2.6
CUX1P39880 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC31.32■■■□□ 2.6
CUX1P39880 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
CUX1P39880 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
CUX1P39880 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms