Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim39Q9ESN2 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim39Q9ESN2 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC21.17■□□□□ 0.98
Trim39Q9ESN2 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Trim39Q9ESN2 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim39Q9ESN2 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Trim39Q9ESN2 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim39Q9ESN2 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC21.17■□□□□ 0.98
Trim39Q9ESN2 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim39Q9ESN2 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim39Q9ESN2 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC21.16■□□□□ 0.98
Trim39Q9ESN2 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim39Q9ESN2 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Trim39Q9ESN2 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Trim39Q9ESN2 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim39Q9ESN2 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC21.15■□□□□ 0.98
Trim39Q9ESN2 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Trim39Q9ESN2 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim39Q9ESN2 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Trim39Q9ESN2 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Trim39Q9ESN2 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Trim39Q9ESN2 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim39Q9ESN2 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC21.14■□□□□ 0.97
Trim39Q9ESN2 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim39Q9ESN2 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim39Q9ESN2 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim39Q9ESN2 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Trim39Q9ESN2 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim39Q9ESN2 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC21.13■□□□□ 0.97
Trim39Q9ESN2 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim39Q9ESN2 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC21.12■□□□□ 0.97
Trim39Q9ESN2 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Trim39Q9ESN2 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC21.12■□□□□ 0.97
Trim39Q9ESN2 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Trim39Q9ESN2 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Trim39Q9ESN2 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim39Q9ESN2 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Trim39Q9ESN2 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC21.11■□□□□ 0.97
Trim39Q9ESN2 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim39Q9ESN2 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim39Q9ESN2 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Trim39Q9ESN2 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim39Q9ESN2 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Trim39Q9ESN2 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC21.1■□□□□ 0.97
Trim39Q9ESN2 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
Trim39Q9ESN2 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim39Q9ESN2 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC21.09■□□□□ 0.97
Trim39Q9ESN2 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim39Q9ESN2 AC122428.3-201ENSMUST00000215551 2290 ntBASIC21.08■□□□□ 0.97
Trim39Q9ESN2 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Trim39Q9ESN2 Gm8503-201ENSMUST00000118131 455 ntBASIC21.08■□□□□ 0.97
Trim39Q9ESN2 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trim39Q9ESN2 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Trim39Q9ESN2 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Trim39Q9ESN2 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trim39Q9ESN2 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.96
Trim39Q9ESN2 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Trim39Q9ESN2 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
Trim39Q9ESN2 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
Trim39Q9ESN2 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trim39Q9ESN2 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC21.07■□□□□ 0.96
Trim39Q9ESN2 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trim39Q9ESN2 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Trim39Q9ESN2 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC21.07■□□□□ 0.96
Trim39Q9ESN2 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trim39Q9ESN2 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim39Q9ESN2 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim39Q9ESN2 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Trim39Q9ESN2 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC21.05■□□□□ 0.96
Trim39Q9ESN2 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Trim39Q9ESN2 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim39Q9ESN2 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Trim39Q9ESN2 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim39Q9ESN2 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Trim39Q9ESN2 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim39Q9ESN2 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim39Q9ESN2 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim39Q9ESN2 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim39Q9ESN2 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim39Q9ESN2 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim39Q9ESN2 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.95
Trim39Q9ESN2 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Trim39Q9ESN2 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC21.01■□□□□ 0.95
Trim39Q9ESN2 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
Trim39Q9ESN2 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Trim39Q9ESN2 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim39Q9ESN2 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Trim39Q9ESN2 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Trim39Q9ESN2 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC21■□□□□ 0.95
Trim39Q9ESN2 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC21■□□□□ 0.95
Trim39Q9ESN2 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim39Q9ESN2 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC21■□□□□ 0.95
Trim39Q9ESN2 Gm37847-201ENSMUST00000192163 1497 ntBASIC21■□□□□ 0.95
Trim39Q9ESN2 Gm31748-201ENSMUST00000194938 1497 ntBASIC21■□□□□ 0.95
Trim39Q9ESN2 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
Trim39Q9ESN2 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim39Q9ESN2 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trim39Q9ESN2 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Trim39Q9ESN2 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trim39Q9ESN2 Il17rd-202ENSMUST00000223942 2186 ntBASIC20.97■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 16.2 ms