Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Trim47Q8C0E3 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Trim47Q8C0E3 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC25.65■■□□□ 1.7
Trim47Q8C0E3 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC25.64■■□□□ 1.7
Trim47Q8C0E3 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC25.64■■□□□ 1.7
Trim47Q8C0E3 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC25.64■■□□□ 1.7
Trim47Q8C0E3 Gm9812-201ENSMUST00000061934 968 ntBASIC25.64■■□□□ 1.7
Trim47Q8C0E3 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
Trim47Q8C0E3 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC25.64■■□□□ 1.69
Trim47Q8C0E3 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Trim47Q8C0E3 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Trim47Q8C0E3 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
Trim47Q8C0E3 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Trim47Q8C0E3 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
Trim47Q8C0E3 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
Trim47Q8C0E3 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
Trim47Q8C0E3 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Trim47Q8C0E3 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC25.61■■□□□ 1.69
Trim47Q8C0E3 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC25.61■■□□□ 1.69
Trim47Q8C0E3 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Trim47Q8C0E3 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC25.59■■□□□ 1.69
Trim47Q8C0E3 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC25.59■■□□□ 1.69
Trim47Q8C0E3 Gm16437-201ENSMUST00000025669 507 ntBASIC25.59■■□□□ 1.69
Trim47Q8C0E3 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC25.59■■□□□ 1.69
Trim47Q8C0E3 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Trim47Q8C0E3 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Trim47Q8C0E3 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Trim47Q8C0E3 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Trim47Q8C0E3 AC122317.2-201ENSMUST00000218708 1248 ntBASIC25.57■■□□□ 1.68
Trim47Q8C0E3 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
Trim47Q8C0E3 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
Trim47Q8C0E3 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC25.56■■□□□ 1.68
Trim47Q8C0E3 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC25.56■■□□□ 1.68
Trim47Q8C0E3 Gm9806-201ENSMUST00000051080 552 ntBASIC25.56■■□□□ 1.68
Trim47Q8C0E3 Gm4419-202ENSMUST00000226239 1431 ntBASIC25.55■■□□□ 1.68
Trim47Q8C0E3 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC25.55■■□□□ 1.68
Trim47Q8C0E3 Mir6538-201ENSMUST00000183713 110 ntBASIC25.55■■□□□ 1.68
Trim47Q8C0E3 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
Trim47Q8C0E3 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
Trim47Q8C0E3 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
Trim47Q8C0E3 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC25.54■■□□□ 1.68
Trim47Q8C0E3 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
Trim47Q8C0E3 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
Trim47Q8C0E3 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC25.53■■□□□ 1.68
Trim47Q8C0E3 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Trim47Q8C0E3 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC25.52■■□□□ 1.68
Trim47Q8C0E3 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC25.52■■□□□ 1.68
Trim47Q8C0E3 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC25.52■■□□□ 1.68
Trim47Q8C0E3 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC25.52■■□□□ 1.68
Trim47Q8C0E3 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Trim47Q8C0E3 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
Trim47Q8C0E3 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Trim47Q8C0E3 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC25.51■■□□□ 1.67
Trim47Q8C0E3 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
Trim47Q8C0E3 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
Trim47Q8C0E3 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
Trim47Q8C0E3 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
Trim47Q8C0E3 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
Trim47Q8C0E3 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC25.49■■□□□ 1.67
Trim47Q8C0E3 Gm11687-201ENSMUST00000118911 886 ntBASIC25.49■■□□□ 1.67
Trim47Q8C0E3 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC25.49■■□□□ 1.67
Trim47Q8C0E3 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Trim47Q8C0E3 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC25.49■■□□□ 1.67
Trim47Q8C0E3 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
Trim47Q8C0E3 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Trim47Q8C0E3 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Trim47Q8C0E3 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Trim47Q8C0E3 Gm9910-201ENSMUST00000195385 1550 ntBASIC25.48■■□□□ 1.67
Trim47Q8C0E3 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
Trim47Q8C0E3 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC25.46■■□□□ 1.67
Trim47Q8C0E3 AC153890.1-201ENSMUST00000220021 2469 ntBASIC25.46■■□□□ 1.67
Trim47Q8C0E3 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC25.45■■□□□ 1.67
Trim47Q8C0E3 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
Trim47Q8C0E3 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC25.44■■□□□ 1.66
Trim47Q8C0E3 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC25.43■■□□□ 1.66
Trim47Q8C0E3 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC25.43■■□□□ 1.66
Trim47Q8C0E3 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC25.43■■□□□ 1.66
Trim47Q8C0E3 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Trim47Q8C0E3 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Trim47Q8C0E3 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC25.42■■□□□ 1.66
Trim47Q8C0E3 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC25.41■■□□□ 1.66
Trim47Q8C0E3 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC25.41■■□□□ 1.66
Trim47Q8C0E3 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Trim47Q8C0E3 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Trim47Q8C0E3 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Trim47Q8C0E3 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
Trim47Q8C0E3 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
Trim47Q8C0E3 AC153911.1-201ENSMUST00000220378 758 ntBASIC25.4■■□□□ 1.66
Trim47Q8C0E3 Terc-201ENSMUST00000082862 423 ntBASIC25.4■■□□□ 1.66
Trim47Q8C0E3 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
Trim47Q8C0E3 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Trim47Q8C0E3 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC25.4■■□□□ 1.66
Trim47Q8C0E3 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
Trim47Q8C0E3 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
Trim47Q8C0E3 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC25.38■■□□□ 1.65
Trim47Q8C0E3 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Trim47Q8C0E3 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC25.38■■□□□ 1.65
Trim47Q8C0E3 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Trim47Q8C0E3 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Trim47Q8C0E3 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC25.37■■□□□ 1.65
Retrieved 100 of 76,532 protein–RNA pairs in 36.8 ms