Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Ubp1Q811S7 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
Ubp1Q811S7 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
Ubp1Q811S7 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC22.53■■□□□ 1.2
Ubp1Q811S7 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Ubp1Q811S7 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC22.52■■□□□ 1.2
Ubp1Q811S7 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
Ubp1Q811S7 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Ubp1Q811S7 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
Ubp1Q811S7 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC22.51■■□□□ 1.19
Ubp1Q811S7 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Ubp1Q811S7 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Ubp1Q811S7 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Ubp1Q811S7 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Ubp1Q811S7 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Ubp1Q811S7 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Ubp1Q811S7 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC22.49■■□□□ 1.19
Ubp1Q811S7 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Ubp1Q811S7 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Ubp1Q811S7 Mir3960-201ENSMUST00000198213 73 ntBASIC22.49■■□□□ 1.19
Ubp1Q811S7 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC22.49■■□□□ 1.19
Ubp1Q811S7 Gm6311-201ENSMUST00000073790 878 ntBASIC22.49■■□□□ 1.19
Ubp1Q811S7 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Ubp1Q811S7 Gm13889-201ENSMUST00000099689 1386 ntBASIC22.49■■□□□ 1.19
Ubp1Q811S7 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
Ubp1Q811S7 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC22.48■■□□□ 1.19
Ubp1Q811S7 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Ubp1Q811S7 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
Ubp1Q811S7 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Ubp1Q811S7 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
Ubp1Q811S7 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC22.45■■□□□ 1.19
Ubp1Q811S7 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Ubp1Q811S7 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Ubp1Q811S7 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC22.44■■□□□ 1.18
Ubp1Q811S7 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
Ubp1Q811S7 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Ubp1Q811S7 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC22.43■■□□□ 1.18
Ubp1Q811S7 Gm45364-201ENSMUST00000210883 159 ntBASIC22.43■■□□□ 1.18
Ubp1Q811S7 AC154454.1-201ENSMUST00000225253 216 ntBASIC22.43■■□□□ 1.18
Ubp1Q811S7 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Ubp1Q811S7 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
Ubp1Q811S7 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Ubp1Q811S7 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC22.42■■□□□ 1.18
Ubp1Q811S7 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Ubp1Q811S7 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC22.42■■□□□ 1.18
Ubp1Q811S7 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Ubp1Q811S7 Gm4419-202ENSMUST00000226239 1431 ntBASIC22.41■■□□□ 1.18
Ubp1Q811S7 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Ubp1Q811S7 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC22.41■■□□□ 1.18
Ubp1Q811S7 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Ubp1Q811S7 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Ubp1Q811S7 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Ubp1Q811S7 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Ubp1Q811S7 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Ubp1Q811S7 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
Ubp1Q811S7 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Ubp1Q811S7 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Ubp1Q811S7 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Ubp1Q811S7 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Ubp1Q811S7 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.18
Ubp1Q811S7 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Ubp1Q811S7 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Ubp1Q811S7 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC22.39■■□□□ 1.17
Ubp1Q811S7 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.17
Ubp1Q811S7 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
Ubp1Q811S7 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Ubp1Q811S7 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC22.39■■□□□ 1.17
Ubp1Q811S7 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC22.38■■□□□ 1.17
Ubp1Q811S7 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC22.38■■□□□ 1.17
Ubp1Q811S7 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC22.38■■□□□ 1.17
Ubp1Q811S7 Pkd1-207ENSMUST00000228550 1050 ntBASIC22.38■■□□□ 1.17
Ubp1Q811S7 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Ubp1Q811S7 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Ubp1Q811S7 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Ubp1Q811S7 Gm12818-201ENSMUST00000117562 1349 ntBASIC22.36■■□□□ 1.17
Ubp1Q811S7 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
Ubp1Q811S7 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Ubp1Q811S7 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Ubp1Q811S7 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC22.35■■□□□ 1.17
Ubp1Q811S7 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Ubp1Q811S7 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
Ubp1Q811S7 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Ubp1Q811S7 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
Ubp1Q811S7 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC22.33■■□□□ 1.17
Ubp1Q811S7 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Ubp1Q811S7 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.17
Ubp1Q811S7 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Ubp1Q811S7 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
Ubp1Q811S7 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
Ubp1Q811S7 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC22.33■■□□□ 1.16
Ubp1Q811S7 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Ubp1Q811S7 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
Ubp1Q811S7 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC22.32■■□□□ 1.16
Ubp1Q811S7 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Ubp1Q811S7 Gm9812-201ENSMUST00000061934 968 ntBASIC22.32■■□□□ 1.16
Ubp1Q811S7 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Ubp1Q811S7 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
Ubp1Q811S7 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
Ubp1Q811S7 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Ubp1Q811S7 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
Retrieved 100 of 76,532 protein–RNA pairs in 51.9 ms