Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC30.62■■■□□ 2.49
Trim28Q62318 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
Trim28Q62318 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC30.62■■■□□ 2.49
Trim28Q62318 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Trim28Q62318 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC30.62■■■□□ 2.49
Trim28Q62318 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC30.62■■■□□ 2.49
Trim28Q62318 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC30.61■■■□□ 2.49
Trim28Q62318 Gm12366-201ENSMUST00000121722 873 ntBASIC30.61■■■□□ 2.49
Trim28Q62318 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC30.61■■■□□ 2.49
Trim28Q62318 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC30.61■■■□□ 2.49
Trim28Q62318 Gm5786-201ENSMUST00000085368 882 ntBASIC30.61■■■□□ 2.49
Trim28Q62318 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Trim28Q62318 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Trim28Q62318 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Trim28Q62318 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
Trim28Q62318 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Trim28Q62318 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC30.61■■■□□ 2.49
Trim28Q62318 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC30.6■■■□□ 2.49
Trim28Q62318 AC153911.1-201ENSMUST00000220378 758 ntBASIC30.6■■■□□ 2.49
Trim28Q62318 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Trim28Q62318 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Trim28Q62318 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Trim28Q62318 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Trim28Q62318 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
Trim28Q62318 AC151971.4-201ENSMUST00000214717 704 ntBASIC30.59■■■□□ 2.49
Trim28Q62318 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Trim28Q62318 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Trim28Q62318 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
Trim28Q62318 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
Trim28Q62318 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC30.57■■■□□ 2.48
Trim28Q62318 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC30.56■■■□□ 2.48
Trim28Q62318 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC30.56■■■□□ 2.48
Trim28Q62318 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC30.55■■■□□ 2.48
Trim28Q62318 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC30.55■■■□□ 2.48
Trim28Q62318 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
Trim28Q62318 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC30.54■■■□□ 2.48
Trim28Q62318 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
Trim28Q62318 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Trim28Q62318 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Trim28Q62318 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
Trim28Q62318 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC30.53■■■□□ 2.48
Trim28Q62318 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Trim28Q62318 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
Trim28Q62318 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Trim28Q62318 Terc-201ENSMUST00000082862 423 ntBASIC30.52■■■□□ 2.48
Trim28Q62318 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC30.52■■■□□ 2.48
Trim28Q62318 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC30.51■■■□□ 2.48
Trim28Q62318 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC30.51■■■□□ 2.47
Trim28Q62318 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC30.51■■■□□ 2.47
Trim28Q62318 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
Trim28Q62318 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
Trim28Q62318 Gm27502-201ENSMUST00000183495 199 ntBASIC30.5■■■□□ 2.47
Trim28Q62318 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC30.5■■■□□ 2.47
Trim28Q62318 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC30.49■■■□□ 2.47
Trim28Q62318 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC30.49■■■□□ 2.47
Trim28Q62318 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
Trim28Q62318 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Trim28Q62318 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
Trim28Q62318 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
Trim28Q62318 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
Trim28Q62318 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
Trim28Q62318 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC30.44■■■□□ 2.46
Trim28Q62318 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC30.42■■■□□ 2.46
Trim28Q62318 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
Trim28Q62318 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
Trim28Q62318 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
Trim28Q62318 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC30.41■■■□□ 2.46
Trim28Q62318 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC30.41■■■□□ 2.46
Trim28Q62318 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
Trim28Q62318 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Trim28Q62318 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
Trim28Q62318 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC30.4■■■□□ 2.46
Trim28Q62318 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC30.4■■■□□ 2.46
Trim28Q62318 Gm14523-201ENSMUST00000117260 558 ntBASIC30.39■■■□□ 2.46
Trim28Q62318 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC30.39■■■□□ 2.46
Trim28Q62318 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
Trim28Q62318 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Trim28Q62318 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Trim28Q62318 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Trim28Q62318 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC30.38■■■□□ 2.45
Trim28Q62318 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Trim28Q62318 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Trim28Q62318 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
Trim28Q62318 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC30.37■■■□□ 2.45
Trim28Q62318 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
Trim28Q62318 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC30.36■■■□□ 2.45
Trim28Q62318 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC30.36■■■□□ 2.45
Trim28Q62318 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC30.36■■■□□ 2.45
Trim28Q62318 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC30.35■■■□□ 2.45
Trim28Q62318 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC30.35■■■□□ 2.45
Trim28Q62318 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC30.35■■■□□ 2.45
Trim28Q62318 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Trim28Q62318 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
Trim28Q62318 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
Trim28Q62318 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC30.34■■■□□ 2.45
Trim28Q62318 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Trim28Q62318 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Trim28Q62318 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Trim28Q62318 AC122428.3-201ENSMUST00000215551 2290 ntBASIC30.33■■■□□ 2.45
Trim28Q62318 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Retrieved 100 of 76,532 protein–RNA pairs in 91.5 ms