Protein–RNA interactions for Protein: Q5R1I0

Trav6d-4, T cell receptor alpha variable 6D-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-4Q5R1I0 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trav6d-4Q5R1I0 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC19.37■□□□□ 0.69
Trav6d-4Q5R1I0 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trav6d-4Q5R1I0 Gm9806-201ENSMUST00000051080 552 ntBASIC19.37■□□□□ 0.69
Trav6d-4Q5R1I0 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trav6d-4Q5R1I0 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trav6d-4Q5R1I0 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trav6d-4Q5R1I0 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trav6d-4Q5R1I0 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trav6d-4Q5R1I0 Gm11687-201ENSMUST00000118911 886 ntBASIC19.35■□□□□ 0.69
Trav6d-4Q5R1I0 Gm16437-201ENSMUST00000025669 507 ntBASIC19.35■□□□□ 0.69
Trav6d-4Q5R1I0 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC19.35■□□□□ 0.69
Trav6d-4Q5R1I0 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trav6d-4Q5R1I0 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trav6d-4Q5R1I0 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trav6d-4Q5R1I0 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trav6d-4Q5R1I0 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Trav6d-4Q5R1I0 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Trav6d-4Q5R1I0 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Trav6d-4Q5R1I0 AC122317.2-201ENSMUST00000218708 1248 ntBASIC19.34■□□□□ 0.69
Trav6d-4Q5R1I0 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trav6d-4Q5R1I0 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Trav6d-4Q5R1I0 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trav6d-4Q5R1I0 AC122428.3-201ENSMUST00000215551 2290 ntBASIC19.33■□□□□ 0.68
Trav6d-4Q5R1I0 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Trav6d-4Q5R1I0 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
Trav6d-4Q5R1I0 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trav6d-4Q5R1I0 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Trav6d-4Q5R1I0 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trav6d-4Q5R1I0 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC19.31■□□□□ 0.68
Trav6d-4Q5R1I0 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trav6d-4Q5R1I0 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trav6d-4Q5R1I0 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trav6d-4Q5R1I0 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trav6d-4Q5R1I0 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trav6d-4Q5R1I0 Gm4419-202ENSMUST00000226239 1431 ntBASIC19.29■□□□□ 0.68
Trav6d-4Q5R1I0 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC19.29■□□□□ 0.68
Trav6d-4Q5R1I0 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trav6d-4Q5R1I0 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trav6d-4Q5R1I0 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trav6d-4Q5R1I0 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trav6d-4Q5R1I0 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Trav6d-4Q5R1I0 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trav6d-4Q5R1I0 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
Trav6d-4Q5R1I0 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trav6d-4Q5R1I0 AC153911.1-201ENSMUST00000220378 758 ntBASIC19.26■□□□□ 0.67
Trav6d-4Q5R1I0 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trav6d-4Q5R1I0 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trav6d-4Q5R1I0 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trav6d-4Q5R1I0 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trav6d-4Q5R1I0 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trav6d-4Q5R1I0 Gm9910-201ENSMUST00000195385 1550 ntBASIC19.25■□□□□ 0.67
Trav6d-4Q5R1I0 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC19.25■□□□□ 0.67
Trav6d-4Q5R1I0 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trav6d-4Q5R1I0 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Trav6d-4Q5R1I0 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trav6d-4Q5R1I0 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
Trav6d-4Q5R1I0 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trav6d-4Q5R1I0 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC19.24■□□□□ 0.67
Trav6d-4Q5R1I0 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trav6d-4Q5R1I0 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trav6d-4Q5R1I0 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trav6d-4Q5R1I0 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Trav6d-4Q5R1I0 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trav6d-4Q5R1I0 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC19.22■□□□□ 0.67
Trav6d-4Q5R1I0 Terc-201ENSMUST00000082862 423 ntBASIC19.22■□□□□ 0.67
Trav6d-4Q5R1I0 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Trav6d-4Q5R1I0 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trav6d-4Q5R1I0 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trav6d-4Q5R1I0 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC19.21■□□□□ 0.67
Trav6d-4Q5R1I0 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trav6d-4Q5R1I0 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trav6d-4Q5R1I0 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trav6d-4Q5R1I0 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trav6d-4Q5R1I0 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trav6d-4Q5R1I0 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
Trav6d-4Q5R1I0 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trav6d-4Q5R1I0 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trav6d-4Q5R1I0 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trav6d-4Q5R1I0 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trav6d-4Q5R1I0 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Trav6d-4Q5R1I0 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC19.19■□□□□ 0.66
Trav6d-4Q5R1I0 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Trav6d-4Q5R1I0 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC19.19■□□□□ 0.66
Trav6d-4Q5R1I0 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Trav6d-4Q5R1I0 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Trav6d-4Q5R1I0 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trav6d-4Q5R1I0 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Trav6d-4Q5R1I0 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trav6d-4Q5R1I0 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trav6d-4Q5R1I0 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trav6d-4Q5R1I0 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trav6d-4Q5R1I0 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trav6d-4Q5R1I0 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trav6d-4Q5R1I0 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC19.17■□□□□ 0.66
Trav6d-4Q5R1I0 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trav6d-4Q5R1I0 Cap2-205ENSMUST00000225824 1634 ntBASIC19.17■□□□□ 0.66
Trav6d-4Q5R1I0 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trav6d-4Q5R1I0 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trav6d-4Q5R1I0 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms