Protein–RNA interactions for Protein: P20040

H-2 class II histocompatibility antigen, E-Q beta chain, mousemouse

Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
P20040 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
P20040 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
P20040 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
P20040 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
P20040 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
P20040 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
P20040 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
P20040 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
P20040 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
P20040 Gm17641-201ENSMUST00000166328 2350 ntBASIC20.21■□□□□ 0.83
P20040 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
P20040 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC20.2■□□□□ 0.82
P20040 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC20.2■□□□□ 0.82
P20040 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
P20040 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC20.2■□□□□ 0.82
P20040 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
P20040 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC20.19■□□□□ 0.82
P20040 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
P20040 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
P20040 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC20.19■□□□□ 0.82
P20040 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
P20040 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
P20040 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC20.18■□□□□ 0.82
P20040 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC20.18■□□□□ 0.82
P20040 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
P20040 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
P20040 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC20.17■□□□□ 0.82
P20040 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
P20040 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
P20040 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
P20040 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
P20040 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
P20040 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
P20040 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
P20040 Gm7432-201ENSMUST00000210343 879 ntBASIC20.15■□□□□ 0.82
P20040 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
P20040 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC20.15■□□□□ 0.82
P20040 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
P20040 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
P20040 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
P20040 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
P20040 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC20.13■□□□□ 0.81
P20040 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
P20040 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
P20040 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
P20040 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
P20040 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
P20040 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
P20040 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
P20040 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC20.11■□□□□ 0.81
P20040 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
P20040 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
P20040 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
P20040 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
P20040 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
P20040 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
P20040 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC20.1■□□□□ 0.81
P20040 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
P20040 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
P20040 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
P20040 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
P20040 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
P20040 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
P20040 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
P20040 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
P20040 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
P20040 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
P20040 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
P20040 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
P20040 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
P20040 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
P20040 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
P20040 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
P20040 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
P20040 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
P20040 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
P20040 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
P20040 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC20.06■□□□□ 0.8
P20040 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
P20040 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
P20040 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
P20040 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC20.05■□□□□ 0.8
P20040 Gm5987-201ENSMUST00000196433 1151 ntBASIC20.05■□□□□ 0.8
P20040 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC20.05■□□□□ 0.8
P20040 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
P20040 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
P20040 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
P20040 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
P20040 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
P20040 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
P20040 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
P20040 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
P20040 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC20.04■□□□□ 0.8
P20040 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
P20040 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
P20040 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
P20040 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
P20040 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC20.03■□□□□ 0.8
P20040 Gm11599-201ENSMUST00000118720 878 ntBASIC20.03■□□□□ 0.8
P20040 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC20.03■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 36.7 ms