Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
Sdc1P18828 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Sdc1P18828 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Sdc1P18828 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Sdc1P18828 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sdc1P18828 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sdc1P18828 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sdc1P18828 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sdc1P18828 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Sdc1P18828 Gm13042-201ENSMUST00000119244 1955 ntBASIC18.9■□□□□ 0.62
Sdc1P18828 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
Sdc1P18828 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Sdc1P18828 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Sdc1P18828 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Sdc1P18828 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Sdc1P18828 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Sdc1P18828 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Sdc1P18828 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Sdc1P18828 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Sdc1P18828 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Sdc1P18828 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Sdc1P18828 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Sdc1P18828 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Sdc1P18828 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Sdc1P18828 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Sdc1P18828 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC18.87■□□□□ 0.61
Sdc1P18828 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Sdc1P18828 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sdc1P18828 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC18.86■□□□□ 0.61
Sdc1P18828 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Sdc1P18828 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Sdc1P18828 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sdc1P18828 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Sdc1P18828 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Sdc1P18828 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Sdc1P18828 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Sdc1P18828 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Sdc1P18828 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Sdc1P18828 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Sdc1P18828 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Sdc1P18828 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Sdc1P18828 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Sdc1P18828 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Sdc1P18828 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Sdc1P18828 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Sdc1P18828 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Sdc1P18828 Gm42699-201ENSMUST00000198104 1657 ntBASIC18.83■□□□□ 0.61
Sdc1P18828 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Sdc1P18828 Dmtn-209ENSMUST00000228295 2572 ntBASIC18.83■□□□□ 0.6
Sdc1P18828 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Sdc1P18828 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Sdc1P18828 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Sdc1P18828 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC18.82■□□□□ 0.6
Sdc1P18828 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Sdc1P18828 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Sdc1P18828 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC18.82■□□□□ 0.6
Sdc1P18828 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC18.82■□□□□ 0.6
Sdc1P18828 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Sdc1P18828 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Sdc1P18828 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Sdc1P18828 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Sdc1P18828 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Sdc1P18828 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Sdc1P18828 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Sdc1P18828 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Sdc1P18828 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Sdc1P18828 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Sdc1P18828 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Sdc1P18828 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Sdc1P18828 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Sdc1P18828 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Sdc1P18828 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Sdc1P18828 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Sdc1P18828 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC18.79■□□□□ 0.6
Sdc1P18828 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
Sdc1P18828 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Sdc1P18828 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Sdc1P18828 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC18.78■□□□□ 0.6
Sdc1P18828 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Sdc1P18828 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Sdc1P18828 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Sdc1P18828 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Sdc1P18828 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Sdc1P18828 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC18.77■□□□□ 0.6
Sdc1P18828 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Sdc1P18828 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Sdc1P18828 Peli2-204ENSMUST00000226513 1320 ntBASIC18.76■□□□□ 0.59
Sdc1P18828 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Sdc1P18828 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC18.76■□□□□ 0.59
Sdc1P18828 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Sdc1P18828 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
Sdc1P18828 Gm27322-201ENSMUST00000184007 104 ntBASIC18.76■□□□□ 0.59
Sdc1P18828 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Sdc1P18828 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Sdc1P18828 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Sdc1P18828 Gm38160-201ENSMUST00000193090 2499 ntBASIC18.75■□□□□ 0.59
Sdc1P18828 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Sdc1P18828 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
Sdc1P18828 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Sdc1P18828 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 89.5 ms