Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Hmgb3O54879 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Hmgb3O54879 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Hmgb3O54879 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC18.99■□□□□ 0.63
Hmgb3O54879 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Hmgb3O54879 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Hmgb3O54879 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Hmgb3O54879 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Hmgb3O54879 H3f3aos-201ENSMUST00000097448 2905 ntBASIC18.98■□□□□ 0.63
Hmgb3O54879 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Hmgb3O54879 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Hmgb3O54879 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC18.98■□□□□ 0.63
Hmgb3O54879 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Hmgb3O54879 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Hmgb3O54879 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Hmgb3O54879 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Hmgb3O54879 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Hmgb3O54879 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Hmgb3O54879 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Hmgb3O54879 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Hmgb3O54879 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Hmgb3O54879 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Hmgb3O54879 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Hmgb3O54879 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Hmgb3O54879 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Hmgb3O54879 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Hmgb3O54879 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Hmgb3O54879 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Hmgb3O54879 Gm8109-201ENSMUST00000194076 746 ntBASIC18.95■□□□□ 0.62
Hmgb3O54879 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
Hmgb3O54879 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Hmgb3O54879 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Hmgb3O54879 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Hmgb3O54879 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Hmgb3O54879 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Hmgb3O54879 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Hmgb3O54879 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Hmgb3O54879 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Hmgb3O54879 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC18.93■□□□□ 0.62
Hmgb3O54879 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
Hmgb3O54879 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC18.92■□□□□ 0.62
Hmgb3O54879 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb3O54879 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb3O54879 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC18.92■□□□□ 0.62
Hmgb3O54879 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb3O54879 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb3O54879 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Hmgb3O54879 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb3O54879 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb3O54879 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb3O54879 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC18.91■□□□□ 0.62
Hmgb3O54879 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb3O54879 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb3O54879 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Hmgb3O54879 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Hmgb3O54879 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Hmgb3O54879 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Hmgb3O54879 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Hmgb3O54879 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
Hmgb3O54879 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Hmgb3O54879 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Hmgb3O54879 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC18.88■□□□□ 0.61
Hmgb3O54879 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Hmgb3O54879 Gm26115-201ENSMUST00000175605 87 ntBASIC18.88■□□□□ 0.61
Hmgb3O54879 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Hmgb3O54879 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
Hmgb3O54879 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Hmgb3O54879 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Hmgb3O54879 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Hmgb3O54879 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC18.87■□□□□ 0.61
Hmgb3O54879 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Hmgb3O54879 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Hmgb3O54879 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Hmgb3O54879 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Hmgb3O54879 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Hmgb3O54879 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Hmgb3O54879 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Hmgb3O54879 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Hmgb3O54879 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Hmgb3O54879 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
Hmgb3O54879 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
Hmgb3O54879 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Hmgb3O54879 Gm17641-201ENSMUST00000166328 2350 ntBASIC18.85■□□□□ 0.61
Hmgb3O54879 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
Hmgb3O54879 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Hmgb3O54879 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Hmgb3O54879 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Hmgb3O54879 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Hmgb3O54879 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC18.85■□□□□ 0.61
Hmgb3O54879 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Hmgb3O54879 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hmgb3O54879 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Hmgb3O54879 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hmgb3O54879 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Hmgb3O54879 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hmgb3O54879 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hmgb3O54879 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hmgb3O54879 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Hmgb3O54879 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Hmgb3O54879 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 54 ms