Protein–RNA interactions for Protein: J3QMG8

Trav13d-3, T cell receptor alpha variable 13D-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav13d-3J3QMG8 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trav13d-3J3QMG8 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trav13d-3J3QMG8 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Trav13d-3J3QMG8 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trav13d-3J3QMG8 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Trav13d-3J3QMG8 Gm7432-201ENSMUST00000210343 879 ntBASIC20.24■□□□□ 0.83
Trav13d-3J3QMG8 Gm4419-202ENSMUST00000226239 1431 ntBASIC20.24■□□□□ 0.83
Trav13d-3J3QMG8 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trav13d-3J3QMG8 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Trav13d-3J3QMG8 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trav13d-3J3QMG8 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trav13d-3J3QMG8 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trav13d-3J3QMG8 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trav13d-3J3QMG8 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trav13d-3J3QMG8 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Trav13d-3J3QMG8 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trav13d-3J3QMG8 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Trav13d-3J3QMG8 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trav13d-3J3QMG8 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC20.21■□□□□ 0.83
Trav13d-3J3QMG8 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC20.2■□□□□ 0.82
Trav13d-3J3QMG8 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Trav13d-3J3QMG8 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Trav13d-3J3QMG8 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC20.2■□□□□ 0.82
Trav13d-3J3QMG8 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Trav13d-3J3QMG8 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trav13d-3J3QMG8 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trav13d-3J3QMG8 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trav13d-3J3QMG8 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trav13d-3J3QMG8 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC20.18■□□□□ 0.82
Trav13d-3J3QMG8 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trav13d-3J3QMG8 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trav13d-3J3QMG8 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trav13d-3J3QMG8 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trav13d-3J3QMG8 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trav13d-3J3QMG8 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Trav13d-3J3QMG8 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Trav13d-3J3QMG8 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Trav13d-3J3QMG8 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Trav13d-3J3QMG8 Gm11599-201ENSMUST00000118720 878 ntBASIC20.16■□□□□ 0.82
Trav13d-3J3QMG8 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trav13d-3J3QMG8 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trav13d-3J3QMG8 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trav13d-3J3QMG8 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trav13d-3J3QMG8 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trav13d-3J3QMG8 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Trav13d-3J3QMG8 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC20.15■□□□□ 0.82
Trav13d-3J3QMG8 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Trav13d-3J3QMG8 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Trav13d-3J3QMG8 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Trav13d-3J3QMG8 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trav13d-3J3QMG8 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trav13d-3J3QMG8 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC20.14■□□□□ 0.81
Trav13d-3J3QMG8 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trav13d-3J3QMG8 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Trav13d-3J3QMG8 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trav13d-3J3QMG8 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trav13d-3J3QMG8 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trav13d-3J3QMG8 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Trav13d-3J3QMG8 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Trav13d-3J3QMG8 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trav13d-3J3QMG8 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trav13d-3J3QMG8 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trav13d-3J3QMG8 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Trav13d-3J3QMG8 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Trav13d-3J3QMG8 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trav13d-3J3QMG8 Gm4799-201ENSMUST00000095396 657 ntBASIC20.11■□□□□ 0.81
Trav13d-3J3QMG8 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Trav13d-3J3QMG8 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Trav13d-3J3QMG8 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Trav13d-3J3QMG8 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trav13d-3J3QMG8 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trav13d-3J3QMG8 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trav13d-3J3QMG8 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC20.08■□□□□ 0.81
Trav13d-3J3QMG8 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Trav13d-3J3QMG8 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Trav13d-3J3QMG8 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Trav13d-3J3QMG8 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Trav13d-3J3QMG8 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Trav13d-3J3QMG8 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
Trav13d-3J3QMG8 Gm13889-201ENSMUST00000099689 1386 ntBASIC20.08■□□□□ 0.8
Trav13d-3J3QMG8 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Trav13d-3J3QMG8 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Trav13d-3J3QMG8 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Trav13d-3J3QMG8 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC20.07■□□□□ 0.8
Trav13d-3J3QMG8 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trav13d-3J3QMG8 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Trav13d-3J3QMG8 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC20.06■□□□□ 0.8
Trav13d-3J3QMG8 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC20.06■□□□□ 0.8
Trav13d-3J3QMG8 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Trav13d-3J3QMG8 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Trav13d-3J3QMG8 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trav13d-3J3QMG8 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trav13d-3J3QMG8 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Trav13d-3J3QMG8 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Trav13d-3J3QMG8 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trav13d-3J3QMG8 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trav13d-3J3QMG8 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Trav13d-3J3QMG8 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trav13d-3J3QMG8 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trav13d-3J3QMG8 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 301.5 ms