Protein–RNA interactions for Protein: A0A075B641

Trav8-1, T cell receptor alpha variable 8-1 (Fragment), mousemouse

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8-1A0A075B641 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trav8-1A0A075B641 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav8-1A0A075B641 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav8-1A0A075B641 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav8-1A0A075B641 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav8-1A0A075B641 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav8-1A0A075B641 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav8-1A0A075B641 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Trav8-1A0A075B641 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC16.39■□□□□ 0.21
Trav8-1A0A075B641 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav8-1A0A075B641 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav8-1A0A075B641 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav8-1A0A075B641 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav8-1A0A075B641 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Trav8-1A0A075B641 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav8-1A0A075B641 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav8-1A0A075B641 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav8-1A0A075B641 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Trav8-1A0A075B641 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav8-1A0A075B641 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC16.38■□□□□ 0.21
Trav8-1A0A075B641 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
Trav8-1A0A075B641 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav8-1A0A075B641 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav8-1A0A075B641 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav8-1A0A075B641 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav8-1A0A075B641 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Trav8-1A0A075B641 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trav8-1A0A075B641 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Trav8-1A0A075B641 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trav8-1A0A075B641 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trav8-1A0A075B641 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Trav8-1A0A075B641 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Trav8-1A0A075B641 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trav8-1A0A075B641 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC16.36■□□□□ 0.21
Trav8-1A0A075B641 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC16.36■□□□□ 0.21
Trav8-1A0A075B641 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trav8-1A0A075B641 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trav8-1A0A075B641 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Trav8-1A0A075B641 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Trav8-1A0A075B641 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trav8-1A0A075B641 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trav8-1A0A075B641 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trav8-1A0A075B641 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Trav8-1A0A075B641 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav8-1A0A075B641 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trav8-1A0A075B641 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trav8-1A0A075B641 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trav8-1A0A075B641 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav8-1A0A075B641 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav8-1A0A075B641 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trav8-1A0A075B641 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
Trav8-1A0A075B641 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trav8-1A0A075B641 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trav8-1A0A075B641 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trav8-1A0A075B641 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trav8-1A0A075B641 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trav8-1A0A075B641 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Trav8-1A0A075B641 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trav8-1A0A075B641 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trav8-1A0A075B641 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trav8-1A0A075B641 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trav8-1A0A075B641 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trav8-1A0A075B641 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trav8-1A0A075B641 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC16.32■□□□□ 0.2
Trav8-1A0A075B641 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Trav8-1A0A075B641 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav8-1A0A075B641 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trav8-1A0A075B641 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trav8-1A0A075B641 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav8-1A0A075B641 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav8-1A0A075B641 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav8-1A0A075B641 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trav8-1A0A075B641 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav8-1A0A075B641 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav8-1A0A075B641 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav8-1A0A075B641 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav8-1A0A075B641 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav8-1A0A075B641 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav8-1A0A075B641 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC16.29■□□□□ 0.2
Trav8-1A0A075B641 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav8-1A0A075B641 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trav8-1A0A075B641 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trav8-1A0A075B641 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav8-1A0A075B641 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav8-1A0A075B641 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Trav8-1A0A075B641 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Trav8-1A0A075B641 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav8-1A0A075B641 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav8-1A0A075B641 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Trav8-1A0A075B641 Peli2-204ENSMUST00000226513 1320 ntBASIC16.27■□□□□ 0.2
Trav8-1A0A075B641 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Trav8-1A0A075B641 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
Trav8-1A0A075B641 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trav8-1A0A075B641 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav8-1A0A075B641 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Trav8-1A0A075B641 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav8-1A0A075B641 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav8-1A0A075B641 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav8-1A0A075B641 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Trav8-1A0A075B641 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC16.25■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 17.2 ms