RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 SBK2P0C263 348 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 CCL2P13500 99 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 PLS3P13797 630 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 MALP21145 153 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 ATP6V1C1P21283 382 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 ZNF10P21506 573 aaPredicted RBP2.94□□□□□ -1.94
VIM-210ENST00000637053 ACHEP22303 614 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 MST1P26927 711 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 CRABP2P29373 138 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 CD40LGP29965 261 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 SERPINB6P35237 376 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 HMGCLP35914 325 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 SLC1A3P43003 542 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 MAGEA9P43362 315 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 RPS5P46782 204 aaKnown RBP2.94□□□□□ -1.94
VIM-210ENST00000637053 PIK3CGP48736 1102 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 GPR15P49685 360 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 BCAP31P51572 246 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 COPB1P53618 953 aaKnown RBP2.94□□□□□ -1.94
VIM-210ENST00000637053 PNLIPRP2P54317 469 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 HNRNPH2P55795 449 aaKnown RBP2.94□□□□□ -1.94
VIM-210ENST00000637053 SOX10P56693 466 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 KRTAP10-11P60412 298 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 SRP54P61011 504 aaKnown RBP2.94□□□□□ -1.94
VIM-210ENST00000637053 RPL23AP62750 156 aaKnown RBP2.94□□□□□ -1.94
VIM-210ENST00000637053 CDC42EP1Q00587 391 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 GALK2Q01415 458 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 COL10A1Q03692 680 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 CACNG1Q06432 222 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 MZT1Q08AG7 82 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 MGAT2Q10469 447 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 NFATC3Q12968 1075 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 RESTQ13127 1097 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 TARDBPQ13148 414 aaKnown RBP eCLIP2.94□□□□□ -1.94
VIM-210ENST00000637053 CTBP1Q13363 440 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 TP53BP2Q13625 1128 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 RAB32Q13637 225 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 GCKRQ14397 625 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 MVPQ14764 893 aaKnown RBP2.94□□□□□ -1.94
VIM-210ENST00000637053 GRM4Q14833 912 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 STILQ15468 1287 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 GPR19Q15760 415 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 MAPK6Q16659 721 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 PNLIPRP3Q17RR3 467 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 TEX44Q53QW1 395 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 TMEM41BQ5BJD5 291 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 CBWD5Q5RIA9 395 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 C6orf136Q5SQH8 315 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 MFSD14BQ5SR56 506 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 LDLRAP1Q5SW96 308 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 C9orf50Q5SZB4 431 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 UBAP2Q5T6F2 1119 aaKnown RBP2.94□□□□□ -1.94
VIM-210ENST00000637053 C6orf163Q5TEZ5 329 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 AGBL4Q5VU57 503 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 DCAF12L1Q5VU92 463 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 EEF1DP3Q658K8 133 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 STEAP3Q658P3 488 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 E4F1Q66K89 784 aaPredicted RBP2.94□□□□□ -1.94
VIM-210ENST00000637053 HMBOX1Q6NT76 420 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 MRNIPQ6NTE8 343 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 IL20RBQ6UXL0 311 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 Q6ZSN1 163 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 ZNF627Q7L945 461 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 PHLDB2Q86SQ0 1253 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 LINC00523Q86TU6 105 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 EXOC3L1Q86VI1 746 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 TBC1D10CQ8IV04 446 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 CNGA4Q8IV77 575 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 ARID3BQ8IVW6 561 aaPredicted RBP2.94□□□□□ -1.94
VIM-210ENST00000637053 C1orf210Q8IVY1 113 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 YAF2Q8IY57 180 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 CCDC36Q8IYA8 594 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 SELENOHQ8IZQ5 122 aaKnown RBP2.94□□□□□ -1.94
VIM-210ENST00000637053 CLEC4FQ8N1N0 589 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 NECAB1Q8N987 351 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 KBTBD3Q8NAB2 608 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 SRFBP1Q8NEF9 429 aaKnown RBP2.94□□□□□ -1.94
VIM-210ENST00000637053 TMEM185AQ8NFB2 350 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 OR7G1Q8NGA0 311 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 OR56B1Q8NGI3 324 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 EXD1Q8NHP7 514 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 SUN3Q8TAQ9 357 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 ING5Q8WYH8 240 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 RAB1CQ92928 201 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 SLC25A36Q96CQ1 311 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 KLHL29Q96CT2 875 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 HAVCR1Q96D42 359 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 C16orf58Q96GQ5 468 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 TMEM176AQ96HP8 235 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 ABHD8Q96I13 439 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 REXO5Q96IC2 774 aaKnown RBP2.94□□□□□ -1.94
VIM-210ENST00000637053 SERAC1Q96JX3 654 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 PRRC1Q96M27 445 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 FOXN4Q96NZ1 517 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 PANX1Q96RD7 426 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 OSBPL9Q96SU4 736 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 CHP1Q99653 195 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 GPA33Q99795 319 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 CHID1Q9BWS9 393 aa2.94□□□□□ -1.94
VIM-210ENST00000637053 PARD6GQ9BYG4 376 aaPredicted RBP2.94□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms