RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 CLPPQ16740 277 aaPredicted RBP17.31■□□□□ 0.36
CLN3-247ENST00000636351 GALNT7Q86SF2 657 aa17.31■□□□□ 0.36
CLN3-247ENST00000636351 SLC26A11Q86WA9 606 aa17.31■□□□□ 0.36
CLN3-247ENST00000636351 SIDT2Q8NBJ9 832 aaKnown RBP17.31■□□□□ 0.36
CLN3-247ENST00000636351 OR5AR1Q8NGP9 310 aa17.31■□□□□ 0.36
CLN3-247ENST00000636351 GPR21Q99679 349 aa17.31■□□□□ 0.36
CLN3-247ENST00000636351 KIR3DX1Q9H7L2 352 aa17.31■□□□□ 0.36
CLN3-247ENST00000636351 MVB12BQ9H7P6 319 aa17.31■□□□□ 0.36
CLN3-247ENST00000636351 LRRC4CQ9HCJ2 640 aa17.31■□□□□ 0.36
CLN3-247ENST00000636351 TRMT6Q9UJA5 497 aaKnown RBP17.31■□□□□ 0.36
CLN3-247ENST00000636351 CORO1CQ9ULV4 474 aaPredicted RBP17.31■□□□□ 0.36
CLN3-247ENST00000636351 TDRKHQ9Y2W6 561 aaKnown RBP17.31■□□□□ 0.36
CLN3-247ENST00000636351 PSAT1Q9Y617 370 aa17.31■□□□□ 0.36
CLN3-247ENST00000636351 TLN1Q9Y490 2541 aaKnown RBP17.3■□□□□ 0.36
CLN3-247ENST00000636351 SLCO2B1O94956 709 aa17.3■□□□□ 0.36
CLN3-247ENST00000636351 SFTPCP11686 197 aa17.3■□□□□ 0.36
CLN3-247ENST00000636351 MPSTP25325 297 aa17.3■□□□□ 0.36
CLN3-247ENST00000636351 GABRB3P28472 473 aa17.3■□□□□ 0.36
CLN3-247ENST00000636351 ECHS1P30084 290 aa17.3■□□□□ 0.36
CLN3-247ENST00000636351 PHBP35232 272 aa17.3■□□□□ 0.36
CLN3-247ENST00000636351 LIMK2P53671 638 aa17.3■□□□□ 0.36
CLN3-247ENST00000636351 ABRQ12979 859 aa17.3■□□□□ 0.36
CLN3-247ENST00000636351 SNAP47Q5SQN1 464 aa17.3■□□□□ 0.36
CLN3-247ENST00000636351 RBM20Q5T481 1227 aaKnown RBP17.3■□□□□ 0.36
CLN3-247ENST00000636351 UGT3A1Q6NUS8 523 aa17.3■□□□□ 0.36
CLN3-247ENST00000636351 ATG14Q6ZNE5 492 aa17.3■□□□□ 0.36
CLN3-247ENST00000636351 ACVR1CQ8NER5 493 aa17.3■□□□□ 0.36
CLN3-247ENST00000636351 FBF1Q8TES7 1133 aa17.3■□□□□ 0.36
CLN3-247ENST00000636351 ELMO2Q96JJ3 720 aa17.3■□□□□ 0.36
CLN3-247ENST00000636351 FOPNLQ96NB1 174 aa17.3■□□□□ 0.36
CLN3-247ENST00000636351 TAAR9Q96RI9 348 aa17.3■□□□□ 0.36
CLN3-247ENST00000636351 TAS2R13Q9NYV9 303 aa17.3■□□□□ 0.36
CLN3-247ENST00000636351 NINJ2Q9NZG7 142 aa17.3■□□□□ 0.36
CLN3-247ENST00000636351 GALPQ9UBC7 116 aa17.3■□□□□ 0.36
CLN3-247ENST00000636351 SLC24A2Q9UI40 661 aa17.3■□□□□ 0.36
CLN3-247ENST00000636351 CDYLQ9Y232 598 aa17.3■□□□□ 0.36
CLN3-247ENST00000636351 SUV39H1O43463 412 aa17.29■□□□□ 0.36
CLN3-247ENST00000636351 SLU7O95391 586 aaKnown RBP17.29■□□□□ 0.36
CLN3-247ENST00000636351 RPN2P04844 631 aa17.29■□□□□ 0.36
CLN3-247ENST00000636351 SAT1P21673 171 aa17.29■□□□□ 0.36
CLN3-247ENST00000636351 ACADLP28330 430 aa17.29■□□□□ 0.36
CLN3-247ENST00000636351 CAPZBP47756 277 aa17.29■□□□□ 0.36
CLN3-247ENST00000636351 ATP1A2P50993 1020 aa17.29■□□□□ 0.36
CLN3-247ENST00000636351 CLCN7P51798 805 aa17.29■□□□□ 0.36
CLN3-247ENST00000636351 KYNUQ16719 465 aa17.29■□□□□ 0.36
CLN3-247ENST00000636351 ACSBG2Q5FVE4 666 aa17.29■□□□□ 0.36
CLN3-247ENST00000636351 FAM45BPQ6NSW5 357 aa17.29■□□□□ 0.36
CLN3-247ENST00000636351 KLHL35Q6PF15 583 aa17.29■□□□□ 0.36
CLN3-247ENST00000636351 TBC1D21Q8IYX1 336 aa17.29■□□□□ 0.36
CLN3-247ENST00000636351 OR4D9Q8NGE8 314 aa17.29■□□□□ 0.36
CLN3-247ENST00000636351 GIMAP7Q8NHV1 300 aa17.29■□□□□ 0.36
CLN3-247ENST00000636351 FAM45AQ8TCE6 357 aa17.29■□□□□ 0.36
CLN3-247ENST00000636351 ZFPM2Q8WW38 1151 aa17.29■□□□□ 0.36
CLN3-247ENST00000636351 LCN9Q8WX39 176 aa17.29■□□□□ 0.36
CLN3-247ENST00000636351 RSC1A1Q92681 617 aa17.29■□□□□ 0.36
CLN3-247ENST00000636351 NKD1Q969G9 470 aa17.29■□□□□ 0.36
CLN3-247ENST00000636351 SLC30A3Q99726 388 aa17.29■□□□□ 0.36
CLN3-247ENST00000636351 DPYSL5Q9BPU6 564 aa17.29■□□□□ 0.36
CLN3-247ENST00000636351 CDC42EP4Q9H3Q1 356 aaKnown RBP17.29■□□□□ 0.36
CLN3-247ENST00000636351 SMYD2Q9NRG4 433 aa17.29■□□□□ 0.36
CLN3-247ENST00000636351 TMEM9Q9P0T7 183 aa17.29■□□□□ 0.36
CLN3-247ENST00000636351 KLHL3Q9UH77 587 aa17.29■□□□□ 0.36
CLN3-247ENST00000636351 RUVBL2Q9Y230 463 aaKnown RBP17.29■□□□□ 0.36
CLN3-247ENST00000636351 PCDHGA3Q9Y5H0 932 aa17.29■□□□□ 0.36
CLN3-247ENST00000636351 UBR5O95071 2799 aaPredicted RBP17.29■□□□□ 0.36
CLN3-247ENST00000636351 BSNQ9UPA5 3926 aa17.29■□□□□ 0.36
CLN3-247ENST00000636351 SPTA1P02549 2419 aa17.29■□□□□ 0.36
CLN3-247ENST00000636351 FAM159BA6NKW6 160 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 CXorf49A8MYA2 514 aaPredicted RBP17.28■□□□□ 0.36
CLN3-247ENST00000636351 KDM1AO60341 852 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 ACSL3O95573 720 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 THRAP10827 490 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 MCM3P25205 808 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 ATP5DP30049 168 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 CDKN2DP55273 166 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 PDAP1Q13442 181 aaKnown RBP17.28■□□□□ 0.36
CLN3-247ENST00000636351 TRA2AQ13595 282 aaKnown RBP eCLIP17.28■□□□□ 0.36
CLN3-247ENST00000636351 EFTUD2Q15029 972 aaKnown RBP eCLIP17.28■□□□□ 0.361e-7■■■■□ 24.1
CLN3-247ENST00000636351 KBTBD12Q3ZCT8 623 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 HECTD2Q5U5R9 776 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 ARMC6Q6NXE6 501 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 IRGCQ6NXR0 463 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 UNC5DQ6UXZ4 953 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 ZC3HC1Q86WB0 502 aaKnown RBP17.28■□□□□ 0.36
CLN3-247ENST00000636351 OOSP2Q86WS3 158 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 PLXDC1Q8IUK5 500 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 DCUN1D3Q8IWE4 304 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 GSPT2Q8IYD1 628 aaKnown RBP17.28■□□□□ 0.36
CLN3-247ENST00000636351 CPNE9Q8IYJ1 553 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 IL22RA1Q8N6P7 574 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 PPM1NQ8N819 430 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 AGBL5Q8NDL9 886 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 OR4E2Q8NGC2 313 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 OR52E1Q8NGJ3 308 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 OR5K2Q8NHB8 316 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 CD200R1Q8TD46 325 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 INPP5DQ92835 1189 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 TGM7Q96PF1 710 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 CPNE1Q99829 537 aa17.28■□□□□ 0.36
CLN3-247ENST00000636351 SLC12A9Q9BXP2 914 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms