RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 ABHD2P08910 425 aa19.67■□□□□ 0.74
PTCD3-220ENST00000627371 CSTF2P33240 577 aaKnown RBP eCLIP19.67■□□□□ 0.74
PTCD3-220ENST00000627371 KPNA2P52292 529 aaKnown RBP19.67■□□□□ 0.74
PTCD3-220ENST00000627371 PMS2P54278 862 aa19.67■□□□□ 0.74
PTCD3-220ENST00000627371 CCSMST1Q4G0I0 132 aa19.67■□□□□ 0.74
PTCD3-220ENST00000627371 CACHD1Q5VU97 1274 aa19.67■□□□□ 0.74
PTCD3-220ENST00000627371 CEP97Q8IW35 865 aa19.67■□□□□ 0.74
PTCD3-220ENST00000627371 MYO1HQ8N1T3 1032 aa19.67■□□□□ 0.74
PTCD3-220ENST00000627371 PRR11Q96HE9 360 aaPredicted RBP19.67■□□□□ 0.74
PTCD3-220ENST00000627371 ZNF768Q9H5H4 540 aaKnown RBP19.67■□□□□ 0.74
PTCD3-220ENST00000627371 SPATA7Q9P0W8 599 aa19.67■□□□□ 0.74
PTCD3-220ENST00000627371 SEMA5BQ9P283 1151 aa19.67■□□□□ 0.74
PTCD3-220ENST00000627371 CIDEBQ9UHD4 219 aa19.67■□□□□ 0.74
PTCD3-220ENST00000627371 SLC39A10Q9ULF5 831 aa19.67■□□□□ 0.74
PTCD3-220ENST00000627371 A0A087WUV0 522 aaPredicted RBP19.66■□□□□ 0.74
PTCD3-220ENST00000627371 PIPSLA2A3N6 862 aa19.66■□□□□ 0.74
PTCD3-220ENST00000627371 PMS2P1A4D2B8 440 aa19.66■□□□□ 0.74
PTCD3-220ENST00000627371 C2orf74A8MZ97 194 aa19.66■□□□□ 0.74
PTCD3-220ENST00000627371 MYO1CO00159 1063 aa19.66■□□□□ 0.74
PTCD3-220ENST00000627371 KIF1CO43896 1103 aaKnown RBP19.66■□□□□ 0.74
PTCD3-220ENST00000627371 ITGA2BP08514 1039 aa19.66■□□□□ 0.74
PTCD3-220ENST00000627371 CHRM5P08912 532 aaPredicted RBP19.66■□□□□ 0.74
PTCD3-220ENST00000627371 SLC12A2P55011 1212 aa19.66■□□□□ 0.74
PTCD3-220ENST00000627371 SP140Q13342 867 aa19.66■□□□□ 0.74
PTCD3-220ENST00000627371 ZNF460Q14592 562 aa19.66■□□□□ 0.74
PTCD3-220ENST00000627371 USP10Q14694 798 aaKnown RBP19.66■□□□□ 0.74
PTCD3-220ENST00000627371 IGF2-ASQ6U949 168 aa19.66■□□□□ 0.74
PTCD3-220ENST00000627371 TMEM207Q6UWW9 146 aa19.66■□□□□ 0.74
PTCD3-220ENST00000627371 UNQ6494/PRO21346Q6UXR6 183 aa19.66■□□□□ 0.74
PTCD3-220ENST00000627371 CARFQ8N187 725 aa19.66■□□□□ 0.74
PTCD3-220ENST00000627371 RAB42Q8N4Z0 105 aa19.66■□□□□ 0.74
PTCD3-220ENST00000627371 LINC01555Q8NAE3 123 aa19.66■□□□□ 0.74
PTCD3-220ENST00000627371 OR9A1PQ8NGU1 263 aa19.66■□□□□ 0.74
PTCD3-220ENST00000627371 OR2L8Q8NGY9 312 aa19.66■□□□□ 0.74
PTCD3-220ENST00000627371 UBXN4Q92575 508 aa19.66■□□□□ 0.74
PTCD3-220ENST00000627371 TSPAN17Q96FV3 270 aa19.66■□□□□ 0.74
PTCD3-220ENST00000627371 PDLIM5Q96HC4 596 aaKnown RBP19.66■□□□□ 0.74
PTCD3-220ENST00000627371 IL17FQ96PD4 163 aa19.66■□□□□ 0.74
PTCD3-220ENST00000627371 MAP3K3Q99759 626 aa19.66■□□□□ 0.74
PTCD3-220ENST00000627371 CAB39LQ9H9S4 337 aa19.66■□□□□ 0.74
PTCD3-220ENST00000627371 SYTL2Q9HCH5 934 aa19.66■□□□□ 0.74
PTCD3-220ENST00000627371 ACTR10Q9NZ32 417 aa19.66■□□□□ 0.74
PTCD3-220ENST00000627371 AK5Q9Y6K8 562 aa19.66■□□□□ 0.74
PTCD3-220ENST00000627371 KRT87PA6NCN2 255 aa19.65■□□□□ 0.74
PTCD3-220ENST00000627371 AGRPO00253 132 aa19.65■□□□□ 0.74
PTCD3-220ENST00000627371 RIPK2O43353 540 aa19.65■□□□□ 0.74
PTCD3-220ENST00000627371 ZBTB14O43829 449 aa19.65■□□□□ 0.74
PTCD3-220ENST00000627371 DXOO77932 396 aaKnown RBP19.65■□□□□ 0.74
PTCD3-220ENST00000627371 WISP3O95389 354 aaPredicted RBP19.65■□□□□ 0.74
PTCD3-220ENST00000627371 C8GP07360 202 aa19.65■□□□□ 0.74
PTCD3-220ENST00000627371 JMJD7P0C870 316 aa19.65■□□□□ 0.74
PTCD3-220ENST00000627371 HGFP14210 728 aa19.65■□□□□ 0.74
PTCD3-220ENST00000627371 MAP4P27816 1152 aaKnown RBP19.65■□□□□ 0.74
PTCD3-220ENST00000627371 PRDX3P30048 256 aaKnown RBP19.65■□□□□ 0.74
PTCD3-220ENST00000627371 ZKSCAN8Q15776 578 aaPredicted RBP19.65■□□□□ 0.74
PTCD3-220ENST00000627371 FOXR1Q6PIV2 292 aa19.65■□□□□ 0.74
PTCD3-220ENST00000627371 UBE2R2Q712K3 238 aaPredicted RBP19.65■□□□□ 0.74
PTCD3-220ENST00000627371 LSMEM2Q8N112 164 aa19.65■□□□□ 0.74
PTCD3-220ENST00000627371 NKAPQ8N5F7 415 aaKnown RBP19.65■□□□□ 0.74
PTCD3-220ENST00000627371 DENND1AQ8TEH3 1009 aa19.65■□□□□ 0.74
PTCD3-220ENST00000627371 KLHL6Q8WZ60 621 aa19.65■□□□□ 0.74
PTCD3-220ENST00000627371 GPAMQ9HCL2 828 aa19.65■□□□□ 0.74
PTCD3-220ENST00000627371 IGHV5-51A0A0C4DH38 117 aa19.64■□□□□ 0.73
PTCD3-220ENST00000627371 C1QTNF9BB2RNN3 333 aa19.64■□□□□ 0.73
PTCD3-220ENST00000627371 SLC16A5O15375 505 aa19.64■□□□□ 0.73
PTCD3-220ENST00000627371 BRINP1O60477 761 aa19.64■□□□□ 0.73
PTCD3-220ENST00000627371 C1QTNF9P0C862 333 aa19.64■□□□□ 0.73
PTCD3-220ENST00000627371 ERGP11308 486 aa19.64■□□□□ 0.73
PTCD3-220ENST00000627371 STMN1P16949 149 aa19.64■□□□□ 0.73
PTCD3-220ENST00000627371 ITIH1P19827 911 aa19.64■□□□□ 0.73
PTCD3-220ENST00000627371 PEBP1P30086 187 aaKnown RBP19.64■□□□□ 0.73
PTCD3-220ENST00000627371 MLLT3P42568 568 aaPredicted RBP19.64■□□□□ 0.73
PTCD3-220ENST00000627371 VSNL1P62760 191 aa19.64■□□□□ 0.73
PTCD3-220ENST00000627371 KIR2DS3Q14952 304 aa19.64■□□□□ 0.73
PTCD3-220ENST00000627371 UAP1Q16222 522 aaPredicted RBP19.64■□□□□ 0.73
PTCD3-220ENST00000627371 ANKS6Q68DC2 871 aa19.64■□□□□ 0.73
PTCD3-220ENST00000627371 SPESP1Q6UW49 350 aa19.64■□□□□ 0.73
PTCD3-220ENST00000627371 KMT5CQ86Y97 462 aa19.64■□□□□ 0.73
PTCD3-220ENST00000627371 UHMK1Q8TAS1 419 aaKnown RBP19.64■□□□□ 0.73
PTCD3-220ENST00000627371 HMGCLL1Q8TB92 370 aa19.64■□□□□ 0.73
PTCD3-220ENST00000627371 SLC44A1Q8WWI5 657 aa19.64■□□□□ 0.73
PTCD3-220ENST00000627371 DLG3Q92796 817 aa19.64■□□□□ 0.73
PTCD3-220ENST00000627371 MRRFQ96E11 262 aaKnown RBP19.64■□□□□ 0.73
PTCD3-220ENST00000627371 PKP4Q99569 1192 aa19.64■□□□□ 0.73
PTCD3-220ENST00000627371 SLC12A9Q9BXP2 914 aa19.64■□□□□ 0.73
PTCD3-220ENST00000627371 PITPNM3Q9BZ71 974 aa19.64■□□□□ 0.73
PTCD3-220ENST00000627371 C1GALT1Q9NS00 363 aa19.64■□□□□ 0.73
PTCD3-220ENST00000627371 SPHK1Q9NYA1 384 aa19.64■□□□□ 0.73
PTCD3-220ENST00000627371 DKK4Q9UBT3 224 aa19.64■□□□□ 0.73
PTCD3-220ENST00000627371 PISDQ9UG56 409 aa19.64■□□□□ 0.73
PTCD3-220ENST00000627371 NOL12Q9UGY1 213 aaKnown RBP eCLIP19.64■□□□□ 0.73
PTCD3-220ENST00000627371 LNPEPQ9UIQ6 1025 aa19.64■□□□□ 0.73
PTCD3-220ENST00000627371 ADAMTS6Q9UKP5 1117 aa19.64■□□□□ 0.73
PTCD3-220ENST00000627371 V9GYY5 206 aaPredicted RBP19.64■□□□□ 0.73
PTCD3-220ENST00000627371 EFCAB7A8K855 629 aa19.63■□□□□ 0.73
PTCD3-220ENST00000627371 INHBAP08476 426 aa19.63■□□□□ 0.73
PTCD3-220ENST00000627371 FGF3P11487 239 aaPredicted RBP19.63■□□□□ 0.73
PTCD3-220ENST00000627371 CCL4P13236 92 aa19.63■□□□□ 0.73
PTCD3-220ENST00000627371 UGT2B7P16662 529 aa19.63■□□□□ 0.73
PTCD3-220ENST00000627371 NELFEP18615 380 aaKnown RBP19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms