RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 HEATR4Q86WZ0 1026 aa2.24□□□□□ -2.05
SCN1A-208ENST00000625916 TMEM139Q8IV31 216 aa2.24□□□□□ -2.05
SCN1A-208ENST00000625916 ESX1Q8N693 406 aa2.24□□□□□ -2.05
SCN1A-208ENST00000625916 TRIML1Q8N9V2 468 aa2.24□□□□□ -2.05
SCN1A-208ENST00000625916 KLHL30-AS1Q8NEE0 82 aa2.24□□□□□ -2.05
SCN1A-208ENST00000625916 OR13C3Q8NGS6 347 aa2.24□□□□□ -2.05
SCN1A-208ENST00000625916 OR13J1Q8NGT2 312 aa2.24□□□□□ -2.05
SCN1A-208ENST00000625916 NPRL2Q8WTW4 380 aa2.24□□□□□ -2.05
SCN1A-208ENST00000625916 IRGQQ8WZA9 623 aa2.24□□□□□ -2.05
SCN1A-208ENST00000625916 RRP36Q96EU6 259 aaKnown RBP2.24□□□□□ -2.05
SCN1A-208ENST00000625916 C10orf90Q96M02 699 aa2.24□□□□□ -2.05
SCN1A-208ENST00000625916 C1orf147Q96MC9 270 aaPredicted RBP2.24□□□□□ -2.05
SCN1A-208ENST00000625916 AGXT2Q9BYV1 514 aa2.24□□□□□ -2.05
SCN1A-208ENST00000625916 B3GAT2Q9NPZ5 323 aa2.24□□□□□ -2.05
SCN1A-208ENST00000625916 EHD2Q9NZN4 543 aa2.24□□□□□ -2.05
SCN1A-208ENST00000625916 NYAP2Q9P242 653 aa2.24□□□□□ -2.05
SCN1A-208ENST00000625916 AMACRQ9UHK6 382 aa2.24□□□□□ -2.05
SCN1A-208ENST00000625916 VSIG4Q9Y279 399 aa2.24□□□□□ -2.05
SCN1A-208ENST00000625916 LOC105371242A0A075B767 164 aa2.23□□□□□ -2.05
SCN1A-208ENST00000625916 A0A087WUV0 522 aaPredicted RBP2.23□□□□□ -2.05
SCN1A-208ENST00000625916 SHISA9B4DS77 424 aa2.23□□□□□ -2.05
SCN1A-208ENST00000625916 TFECO14948 347 aaPredicted RBP2.23□□□□□ -2.05
SCN1A-208ENST00000625916 POP4O95707 220 aaKnown RBP2.23□□□□□ -2.05
SCN1A-208ENST00000625916 EIF2S1P05198 315 aaKnown RBP2.23□□□□□ -2.05
SCN1A-208ENST00000625916 SRPRAP08240 638 aaKnown RBP2.23□□□□□ -2.05
SCN1A-208ENST00000625916 SLC2A2P11168 524 aaPredicted RBP2.23□□□□□ -2.05
SCN1A-208ENST00000625916 RGS2P41220 211 aa2.23□□□□□ -2.05
SCN1A-208ENST00000625916 BIRC3Q13489 604 aa2.23□□□□□ -2.05
SCN1A-208ENST00000625916 MELKQ14680 651 aa2.23□□□□□ -2.05
SCN1A-208ENST00000625916 MED22Q15528 200 aa2.23□□□□□ -2.05
SCN1A-208ENST00000625916 ITPRIPL2Q3MIP1 535 aa2.23□□□□□ -2.05
SCN1A-208ENST00000625916 PDLIM3Q53GG5 364 aaPredicted RBP2.23□□□□□ -2.05
SCN1A-208ENST00000625916 LCN1P1Q5VSP4 162 aa2.23□□□□□ -2.05
SCN1A-208ENST00000625916 FRRS1Q6ZNA5 592 aa2.23□□□□□ -2.05
SCN1A-208ENST00000625916 COMMD2Q86X83 199 aa2.23□□□□□ -2.05
SCN1A-208ENST00000625916 DIS3L2Q8IYB7 885 aaKnown RBP2.23□□□□□ -2.05
SCN1A-208ENST00000625916 PARP8Q8N3A8 854 aa2.23□□□□□ -2.05
SCN1A-208ENST00000625916 C11orf45Q8TAV5 145 aa2.23□□□□□ -2.05
SCN1A-208ENST00000625916 ARHGEF2Q92974 986 aaKnown RBP2.23□□□□□ -2.05
SCN1A-208ENST00000625916 ERLEC1Q96DZ1 483 aa2.23□□□□□ -2.05
SCN1A-208ENST00000625916 ATXN7L3BQ96GX2 97 aa2.23□□□□□ -2.05
SCN1A-208ENST00000625916 ZIM3Q96PE6 472 aa2.23□□□□□ -2.05
SCN1A-208ENST00000625916 PSMB7Q99436 277 aa2.23□□□□□ -2.05
SCN1A-208ENST00000625916 LGMNQ99538 433 aa2.23□□□□□ -2.05
SCN1A-208ENST00000625916 NKX3-1Q99801 234 aaPredicted RBP2.23□□□□□ -2.05
SCN1A-208ENST00000625916 TDRD1Q9BXT4 1180 aaKnown RBP2.23□□□□□ -2.05
SCN1A-208ENST00000625916 FAM49AQ9H0Q0 323 aaPredicted RBP2.23□□□□□ -2.05
SCN1A-208ENST00000625916 PLK3Q9H4B4 646 aa2.23□□□□□ -2.05
SCN1A-208ENST00000625916 WASH6PQ9NQA3 447 aa2.23□□□□□ -2.05
SCN1A-208ENST00000625916 ANAPC11Q9NYG5 84 aa2.23□□□□□ -2.05
SCN1A-208ENST00000625916 RHCGQ9UBD6 479 aa2.23□□□□□ -2.05
SCN1A-208ENST00000625916 MTUS1Q9ULD2 1270 aa2.23□□□□□ -2.05
SCN1A-208ENST00000625916 NENFQ9UMX5 172 aa2.23□□□□□ -2.05
SCN1A-208ENST00000625916 TNNQ9UQP3 1299 aa2.23□□□□□ -2.05
SCN1A-208ENST00000625916 ZNF256Q9Y2P7 627 aaPredicted RBP2.23□□□□□ -2.05
SCN1A-208ENST00000625916 CMAHPQ9Y471 501 aa2.23□□□□□ -2.05
SCN1A-208ENST00000625916 COL16A1Q07092 1604 aaPredicted RBP2.23□□□□□ -2.05
SCN1A-208ENST00000625916 SSX4O60224 188 aa2.22□□□□□ -2.05
SCN1A-208ENST00000625916 HS6ST1O60243 411 aa2.22□□□□□ -2.05
SCN1A-208ENST00000625916 RNASEH1O60930 286 aaKnown RBP2.22□□□□□ -2.05
SCN1A-208ENST00000625916 GLRA3O75311 464 aa2.22□□□□□ -2.05
SCN1A-208ENST00000625916 PRB2P02812 416 aaPredicted RBP2.22□□□□□ -2.05
SCN1A-208ENST00000625916 VTNP04004 478 aa2.22□□□□□ -2.05
SCN1A-208ENST00000625916 PYGLP06737 847 aa2.22□□□□□ -2.05
SCN1A-208ENST00000625916 LBX1P52954 281 aa2.22□□□□□ -2.05
SCN1A-208ENST00000625916 MAZP56270 477 aaKnown RBP2.22□□□□□ -2.05
SCN1A-208ENST00000625916 LYZP61626 148 aa2.22□□□□□ -2.05
SCN1A-208ENST00000625916 KRT33BQ14525 404 aa2.22□□□□□ -2.05
SCN1A-208ENST00000625916 MTF1Q14872 753 aa2.22□□□□□ -2.05
SCN1A-208ENST00000625916 TNIP1Q15025 636 aa2.22□□□□□ -2.05
SCN1A-208ENST00000625916 PHLDA2Q53GA4 152 aa2.22□□□□□ -2.05
SCN1A-208ENST00000625916 GKAP1Q5VSY0 366 aaPredicted RBP2.22□□□□□ -2.05
SCN1A-208ENST00000625916 NOTUMQ6P988 496 aa2.22□□□□□ -2.05
SCN1A-208ENST00000625916 TMEM64Q6YI46 380 aa2.22□□□□□ -2.05
SCN1A-208ENST00000625916 GDPGP1Q6ZNW5 385 aa2.22□□□□□ -2.05
SCN1A-208ENST00000625916 CFAP77Q6ZQR2 320 aa2.22□□□□□ -2.05
SCN1A-208ENST00000625916 CDHR3Q6ZTQ4 885 aa2.22□□□□□ -2.05
SCN1A-208ENST00000625916 CHMP1BQ7LBR1 199 aa2.22□□□□□ -2.05
SCN1A-208ENST00000625916 RTN4RL2Q86UN3 420 aa2.22□□□□□ -2.05
SCN1A-208ENST00000625916 CATSPERDQ86XM0 798 aa2.22□□□□□ -2.05
SCN1A-208ENST00000625916 SCYL3Q8IZE3 742 aa2.22□□□□□ -2.05
SCN1A-208ENST00000625916 MYRIPQ8NFW9 859 aa2.22□□□□□ -2.05
SCN1A-208ENST00000625916 OR52N5Q8NH56 324 aa2.22□□□□□ -2.05
SCN1A-208ENST00000625916 OR1L3Q8NH93 324 aa2.22□□□□□ -2.05
SCN1A-208ENST00000625916 GATAD1Q8WUU5 269 aa2.22□□□□□ -2.05
SCN1A-208ENST00000625916 OR2A14Q96R47 310 aa2.22□□□□□ -2.05
SCN1A-208ENST00000625916 OR2B2Q9GZK3 357 aa2.22□□□□□ -2.05
SCN1A-208ENST00000625916 TUBB1Q9H4B7 451 aa2.22□□□□□ -2.05
SCN1A-208ENST00000625916 GPN1Q9HCN4 374 aaPredicted RBP2.22□□□□□ -2.05
SCN1A-208ENST00000625916 CHMP1AQ9HD42 196 aaPredicted RBP2.22□□□□□ -2.05
SCN1A-208ENST00000625916 ZNF701Q9NV72 531 aaPredicted RBP2.22□□□□□ -2.05
SCN1A-208ENST00000625916 PAG1Q9NWQ8 432 aa2.22□□□□□ -2.05
SCN1A-208ENST00000625916 TAS2R14Q9NYV8 317 aa2.22□□□□□ -2.05
SCN1A-208ENST00000625916 ZHX1Q9UKY1 873 aaPredicted RBP2.22□□□□□ -2.05
SCN1A-208ENST00000625916 GALR3O60755 368 aaPredicted RBP2.21□□□□□ -2.06
SCN1A-208ENST00000625916 CDK2AP2O75956 126 aa2.21□□□□□ -2.06
SCN1A-208ENST00000625916 RSL1D1O76021 490 aaKnown RBP2.21□□□□□ -2.06
SCN1A-208ENST00000625916 PDHA2P29803 388 aa2.21□□□□□ -2.06
SCN1A-208ENST00000625916 ETV5P41161 510 aa2.21□□□□□ -2.06
SCN1A-208ENST00000625916 CAMPP49913 170 aa2.21□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms