RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 OR52E1Q8NGJ3 308 aa14.29□□□□□ -0.12
CD48-203ENST00000613788 LCN9Q8WX39 176 aa14.29□□□□□ -0.12
CD48-203ENST00000613788 ATL1Q8WXF7 558 aa14.29□□□□□ -0.12
CD48-203ENST00000613788 PKP4Q99569 1192 aa14.29□□□□□ -0.12
CD48-203ENST00000613788 SLC38A3Q99624 504 aa14.29□□□□□ -0.12
CD48-203ENST00000613788 EGFL8Q99944 293 aa14.29□□□□□ -0.12
CD48-203ENST00000613788 RAB11FIP5Q9BXF6 653 aa14.29□□□□□ -0.12
CD48-203ENST00000613788 SPATA7Q9P0W8 599 aa14.29□□□□□ -0.12
CD48-203ENST00000613788 CPSF2Q9P2I0 782 aaKnown RBP14.29□□□□□ -0.12
CD48-203ENST00000613788 RAPGEFL1Q9UHV5 662 aa14.29□□□□□ -0.12
CD48-203ENST00000613788 MID2Q9UJV3 735 aa14.29□□□□□ -0.12
CD48-203ENST00000613788 BTBD3Q9Y2F9 522 aa14.29□□□□□ -0.12
CD48-203ENST00000613788 SUPT3HB4E1H0 165 aa14.28□□□□□ -0.12
CD48-203ENST00000613788 GDF9O60383 454 aa14.28□□□□□ -0.12
CD48-203ENST00000613788 PLIN3O60664 434 aa14.28□□□□□ -0.12
CD48-203ENST00000613788 SMIM24O75264 130 aa14.28□□□□□ -0.12
CD48-203ENST00000613788 SUPT3HO75486 399 aa14.28□□□□□ -0.12
CD48-203ENST00000613788 ZWINTO95229 277 aa14.28□□□□□ -0.12
CD48-203ENST00000613788 LDOC1O95751 146 aaPredicted RBP14.28□□□□□ -0.12
CD48-203ENST00000613788 PROCP04070 461 aa14.28□□□□□ -0.12
CD48-203ENST00000613788 PNLIPP16233 465 aa14.28□□□□□ -0.12
CD48-203ENST00000613788 SHMT2P34897 504 aa14.28□□□□□ -0.12
CD48-203ENST00000613788 RPA3P35244 121 aaPredicted RBP14.28□□□□□ -0.12
CD48-203ENST00000613788 HNMTP50135 292 aa14.28□□□□□ -0.12
CD48-203ENST00000613788 SLC18A1P54219 525 aa14.28□□□□□ -0.12
CD48-203ENST00000613788 DAB2P98082 770 aa14.28□□□□□ -0.12
CD48-203ENST00000613788 ARHGAP19Q14CB8 494 aa14.28□□□□□ -0.12
CD48-203ENST00000613788 PROX2Q3B8N5 592 aa14.28□□□□□ -0.12
CD48-203ENST00000613788 CCSMST1Q4G0I0 132 aa14.28□□□□□ -0.12
CD48-203ENST00000613788 NAXDQ8IW45 347 aa14.28□□□□□ -0.12
CD48-203ENST00000613788 TCAIMQ8N3R3 496 aa14.28□□□□□ -0.12
CD48-203ENST00000613788 CCDC63Q8NA47 563 aa14.28□□□□□ -0.12
CD48-203ENST00000613788 RDH11Q8TC12 318 aa14.28□□□□□ -0.12
CD48-203ENST00000613788 NAT6Q93015 286 aa14.28□□□□□ -0.12
CD48-203ENST00000613788 EXT2Q93063 718 aa14.28□□□□□ -0.12
CD48-203ENST00000613788 NUDT4Q9NZJ9 180 aa14.28□□□□□ -0.12
CD48-203ENST00000613788 RNF215Q9Y6U7 377 aa14.28□□□□□ -0.12
CD48-203ENST00000613788 CABIN1Q9Y6J0 2220 aa14.28□□□□□ -0.12
CD48-203ENST00000613788 DNAH14Q0VDD8 3507 aa14.27□□□□□ -0.12
CD48-203ENST00000613788 OTOGLQ3ZCN5 2332 aa14.27□□□□□ -0.12
CD48-203ENST00000613788 EME2A4GXA9 379 aaPredicted RBP14.27□□□□□ -0.12
CD48-203ENST00000613788 NCF1BA6NI72 391 aaPredicted RBP14.27□□□□□ -0.12
CD48-203ENST00000613788 LILRA5A6NI73 299 aa14.27□□□□□ -0.12
CD48-203ENST00000613788 NCF1CA8MVU1 366 aaPredicted RBP14.27□□□□□ -0.12
CD48-203ENST00000613788 TARM1B6A8C7 271 aa14.27□□□□□ -0.12
CD48-203ENST00000613788 UBXN8O00124 270 aa14.27□□□□□ -0.12
CD48-203ENST00000613788 TK2O00142 265 aa14.27□□□□□ -0.12
CD48-203ENST00000613788 SH3BP5O60239 455 aa14.27□□□□□ -0.12
CD48-203ENST00000613788 SLC16A8O95907 504 aa14.27□□□□□ -0.12
CD48-203ENST00000613788 CKMT1AP12532 417 aa14.27□□□□□ -0.12
CD48-203ENST00000613788 GFAPP14136 432 aa14.27□□□□□ -0.12
CD48-203ENST00000613788 NCF1P14598 390 aaPredicted RBP14.27□□□□□ -0.12
CD48-203ENST00000613788 GPR3P46089 330 aa14.27□□□□□ -0.12
CD48-203ENST00000613788 RAB28P51157 221 aa14.27□□□□□ -0.12
CD48-203ENST00000613788 LIMK1P53667 647 aa14.27□□□□□ -0.12
CD48-203ENST00000613788 GRB7Q14451 532 aa14.27□□□□□ -0.12
CD48-203ENST00000613788 SULT1C3Q6IMI6 304 aa14.27□□□□□ -0.12
CD48-203ENST00000613788 AMIGO1Q86WK6 493 aa14.27□□□□□ -0.12
CD48-203ENST00000613788 TMEM151AQ8N4L1 468 aa14.27□□□□□ -0.12
CD48-203ENST00000613788 PDPRQ8NCN5 879 aa14.27□□□□□ -0.12
CD48-203ENST00000613788 OR4E2Q8NGC2 313 aa14.27□□□□□ -0.12
CD48-203ENST00000613788 FBXL8Q96CD0 374 aa14.27□□□□□ -0.12
CD48-203ENST00000613788 CNDP2Q96KP4 475 aaKnown RBP14.27□□□□□ -0.12
CD48-203ENST00000613788 FAM111AQ96PZ2 611 aa14.27□□□□□ -0.12
CD48-203ENST00000613788 SRMSQ9H3Y6 488 aa14.27□□□□□ -0.12
CD48-203ENST00000613788 NKIRAS1Q9NYS0 192 aa14.27□□□□□ -0.12
CD48-203ENST00000613788 FTSJ1Q9UET6 329 aa14.27□□□□□ -0.12
CD48-203ENST00000613788 CIDEBQ9UHD4 219 aa14.27□□□□□ -0.12
CD48-203ENST00000613788 EMCNQ9ULC0 261 aa14.27□□□□□ -0.12
CD48-203ENST00000613788 ARHGEF17Q96PE2 2063 aaPredicted RBP14.27□□□□□ -0.13
CD48-203ENST00000613788 LOC105378220A0A1B0GUY1 285 aaPredicted RBP14.26□□□□□ -0.13
CD48-203ENST00000613788 TMEM120BA0PK00 339 aa14.26□□□□□ -0.13
CD48-203ENST00000613788 CPED1A4D0V7 1026 aa14.26□□□□□ -0.13
CD48-203ENST00000613788 FAM221BA6H8Z2 402 aa14.26□□□□□ -0.13
CD48-203ENST00000613788 GFRA3O60609 400 aa14.26□□□□□ -0.13
CD48-203ENST00000613788 SBK3P0C264 359 aa14.26□□□□□ -0.13
CD48-203ENST00000613788 MYL2P10916 166 aa14.26□□□□□ -0.13
CD48-203ENST00000613788 MTHFD2P13995 350 aa14.26□□□□□ -0.13
CD48-203ENST00000613788 CPA3P15088 417 aa14.26□□□□□ -0.13
CD48-203ENST00000613788 CKMT2P17540 419 aa14.26□□□□□ -0.13
CD48-203ENST00000613788 ATP5F1P24539 256 aaPredicted RBP14.26□□□□□ -0.13
CD48-203ENST00000613788 HPDP32754 393 aaPredicted RBP14.26□□□□□ -0.13
CD48-203ENST00000613788 PNLIPRP1P54315 467 aa14.26□□□□□ -0.13
CD48-203ENST00000613788 EPHA4P54764 986 aa14.26□□□□□ -0.13
CD48-203ENST00000613788 ANKS6Q68DC2 871 aa14.26□□□□□ -0.13
CD48-203ENST00000613788 KLHL35Q6PF15 583 aa14.26□□□□□ -0.13
CD48-203ENST00000613788 ZNF438Q7Z4V0 828 aa14.26□□□□□ -0.13
CD48-203ENST00000613788 SYTL1Q8IYJ3 562 aa14.26□□□□□ -0.13
CD48-203ENST00000613788 FBXO39Q8N4B4 442 aa14.26□□□□□ -0.13
CD48-203ENST00000613788 ARMC2Q8NEN0 867 aa14.26□□□□□ -0.13
CD48-203ENST00000613788 RHBDF1Q96CC6 855 aa14.26□□□□□ -0.13
CD48-203ENST00000613788 CCDC126Q96EE4 140 aa14.26□□□□□ -0.13
CD48-203ENST00000613788 CDC6Q99741 560 aa14.26□□□□□ -0.13
CD48-203ENST00000613788 SELENOSQ9BQE4 189 aa14.26□□□□□ -0.13
CD48-203ENST00000613788 C12orf65Q9H3J6 166 aaKnown RBP14.26□□□□□ -0.13
CD48-203ENST00000613788 OR6C2Q9NZP2 312 aa14.26□□□□□ -0.13
CD48-203ENST00000613788 STOX2Q9P2F5 926 aaPredicted RBP14.26□□□□□ -0.13
CD48-203ENST00000613788 SLC17A7Q9P2U7 560 aa14.26□□□□□ -0.13
CD48-203ENST00000613788 PLAGL1Q9UM63 463 aa14.26□□□□□ -0.13
CD48-203ENST00000613788 LY6G6EA0A0G2JKS1 128 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms