RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 FAM214AQ32MH5 1076 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 TUBB8Q3ZCM7 444 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 VWA2Q5GFL6 755 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 TFDP3Q5H9I0 405 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 CRB2Q5IJ48 1285 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 CCDC181Q5TID7 509 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 SP5Q6BEB4 398 aaPredicted RBP6.07□□□□□ -1.44
CUX1-220ENST00000607092 MRPL14Q6P1L8 145 aaKnown RBP6.07□□□□□ -1.44
CUX1-220ENST00000607092 BRICD5Q6PL45 260 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 ISLR2Q6UXK2 745 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 CDHR3Q6ZTQ4 885 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 DET1Q7L5Y6 550 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 CUZD1Q86UP6 607 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 MCEMP1Q8IX19 187 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 SRRM1Q8IYB3 904 aaKnown RBP6.07□□□□□ -1.44
CUX1-220ENST00000607092 TBC1D21Q8IYX1 336 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 RAB42Q8N4Z0 105 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 SLC25A41Q8N5S1 370 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 PHC3Q8NDX5 983 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 OR4K2Q8NGD2 314 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 OR52E1Q8NGJ3 308 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 SUN3Q8TAQ9 357 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 RELTQ969Z4 430 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 RNF31Q96EP0 1072 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 MRGPRX2Q96LB1 330 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 LMF1Q96S06 567 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 TSSK1BQ9BXA7 367 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 OR52A5Q9H2C5 316 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 COG4Q9H9E3 785 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 SEMA3GQ9NS98 782 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 OLAHQ9NV23 265 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 ZDHHC3Q9NYG2 299 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 ACTR10Q9NZ32 417 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 RSPH14Q9UHP6 348 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 CDC23Q9UJX2 597 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 INTUQ9ULD6 942 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 NOVA2Q9UNW9 492 aaKnown RBP6.07□□□□□ -1.44
CUX1-220ENST00000607092 OSGIN2Q9Y236 505 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 CELSR1Q9NYQ6 3014 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 TNRC6AQ8NDV7 1962 aaKnown RBP6.07□□□□□ -1.44
CUX1-220ENST00000607092 NAV3Q8IVL0 2385 aa6.07□□□□□ -1.44
CUX1-220ENST00000607092 IGLV3-16A0A075B6K0 115 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 TRAV17A0A0B4J275 112 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 H7C0S8 307 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 APOC4-APOC2K7ER74 178 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 BTN3A3O00478 584 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 GAPDHSO14556 408 aaPredicted RBP6.06□□□□□ -1.44
CUX1-220ENST00000607092 CST8O60676 142 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 SRPX2O60687 465 aaPredicted RBP6.06□□□□□ -1.44
CUX1-220ENST00000607092 ZRANB2O95218 330 aaKnown RBP eCLIP6.06□□□□□ -1.44
CUX1-220ENST00000607092 LCA5LO95447 670 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 AP2A1O95782 977 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 ONECUT2O95948 504 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 S1PR4O95977 384 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 CRYABP02511 175 aaKnown RBP6.06□□□□□ -1.44
CUX1-220ENST00000607092 APOC2P02655 101 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 UQCRHP07919 91 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 CBSLP0DN79 551 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 ICAM2P13598 275 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 COX6B1P14854 86 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 UGT2B7P16662 529 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 CAPN3P20807 821 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 ALAS2P22557 587 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 CXCR2P25025 360 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 CBSP35520 551 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 OTUD4Q01804 1114 aaKnown RBP6.06□□□□□ -1.44
CUX1-220ENST00000607092 WASHC5Q12768 1159 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 MFAP5Q13361 173 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 ITIH4Q14624 930 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 GRM7Q14831 915 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 TCEAL1Q15170 157 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 RBBP7Q16576 425 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 SYTL3Q4VX76 610 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 DNAJC21Q5F1R6 531 aaKnown RBP6.06□□□□□ -1.44
CUX1-220ENST00000607092 LCN10Q6JVE6 187 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 DUS1LQ6P1R4 473 aaKnown RBP6.06□□□□□ -1.44
CUX1-220ENST00000607092 TTC23LQ6PF05 361 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 ADGRD1Q6QNK2 874 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 OVCH1Q7RTY7 1134 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 PPP1R32Q7Z5V6 425 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 CDKL3Q8IVW4 592 aaPredicted RBP6.06□□□□□ -1.44
CUX1-220ENST00000607092 RCOR2Q8IZ40 523 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 ADGRF3Q8IZF5 1079 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 EID3Q8N140 333 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 ZNF567Q8N184 647 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 ZNF808Q8N4W9 903 aaPredicted RBP6.06□□□□□ -1.44
CUX1-220ENST00000607092 TTC29Q8NA56 475 aaPredicted RBP6.06□□□□□ -1.44
CUX1-220ENST00000607092 OR8K1Q8NGG5 319 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 OR5K2Q8NHB8 316 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 DNAJB8Q8NHS0 232 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 SLC35G2Q8TBE7 412 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 CCDC110Q8TBZ0 833 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 GRHL3Q8TE85 626 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 OXNAD1Q96HP4 312 aaPredicted RBP6.06□□□□□ -1.44
CUX1-220ENST00000607092 CCDC42Q96M95 316 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 NAP1L5Q96NT1 182 aaPredicted RBP6.06□□□□□ -1.44
CUX1-220ENST00000607092 QKIQ96PU8 341 aaKnown RBP eCLIP6.06□□□□□ -1.446e-15■■■■□ 22.1
CUX1-220ENST00000607092 SLX1AQ9BQ83 275 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 PRR14Q9BWN1 585 aa6.06□□□□□ -1.44
CUX1-220ENST00000607092 RAB11FIP5Q9BXF6 653 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms