RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 AKAP7Q9P0M2 348 aaPredicted RBP16.07■□□□□ 0.16
SHKBP1-219ENST00000599575 PRAMEF33A0A0G2JMD5 474 aa16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 HMX2A2RU54 273 aa16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 ARHGEF33A8MVX0 844 aa16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 C2orf74A8MZ97 194 aa16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 CTIFO43310 598 aaKnown RBP16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 CDH16O75309 829 aa16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 MPOP05164 745 aa16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 SLC35E2BP0CK96 405 aa16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 ERGP11308 486 aa16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 COL6A2P12110 1019 aa16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 TYK2P29597 1187 aa16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 PKLRP30613 574 aa16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 MAGEA12P43365 314 aa16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 PPM1FP49593 454 aaPredicted RBP16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 INHBCP55103 352 aa16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 GRB7Q14451 532 aa16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 CYP2A13Q16696 494 aa16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 FAM83EQ2M2I3 478 aa16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 CDKL4Q5MAI5 379 aa16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 TMEM207Q6UWW9 146 aa16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 USP53Q70EK8 1073 aa16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 KMT5CQ86Y97 462 aa16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 RIBC1Q8N443 379 aaPredicted RBP16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 UHMK1Q8TAS1 419 aaKnown RBP16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 HNRNPLLQ8WVV9 542 aaKnown RBP16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 ATL1Q8WXF7 558 aa16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 MRRFQ96E11 262 aaKnown RBP16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 LIN37Q96GY3 246 aaPredicted RBP16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 MENTQ9BUN1 341 aa16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 ZMYND15Q9H091 742 aa16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 SYNDIG1Q9H7V2 258 aa16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 CAB39LQ9H9S4 337 aa16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 RDH14Q9HBH5 336 aa16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 NMRAL1Q9HBL8 299 aa16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 SNX15Q9NRS6 342 aa16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 SEMA5BQ9P283 1151 aa16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 ICKQ9UPZ9 632 aa16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 NEUROG3Q9Y4Z2 214 aa16.06■□□□□ 0.16
SHKBP1-219ENST00000599575 OR6C74A6NCV1 312 aa16.05■□□□□ 0.16
SHKBP1-219ENST00000599575 CAPN5O15484 640 aaPredicted RBP16.05■□□□□ 0.16
SHKBP1-219ENST00000599575 ALDOAP04075 364 aaKnown RBP16.05■□□□□ 0.16
SHKBP1-219ENST00000599575 CCDC166P0CW27 439 aa16.05■□□□□ 0.16
SHKBP1-219ENST00000599575 THRAP10827 490 aa16.05■□□□□ 0.16
SHKBP1-219ENST00000599575 TYRP1P17643 537 aa16.05■□□□□ 0.16
SHKBP1-219ENST00000599575 CSF2RBP32927 897 aa16.05■□□□□ 0.16
SHKBP1-219ENST00000599575 SHC2P98077 582 aa16.05■□□□□ 0.16
SHKBP1-219ENST00000599575 CDKL1Q00532 357 aa16.05■□□□□ 0.16
SHKBP1-219ENST00000599575 NAA25Q14CX7 972 aa16.05■□□□□ 0.16
SHKBP1-219ENST00000599575 NKAIN2Q5VXU1 208 aa16.05■□□□□ 0.16
SHKBP1-219ENST00000599575 CYB5D1Q6P9G0 228 aa16.05■□□□□ 0.16
SHKBP1-219ENST00000599575 PRSS42Q7Z5A4 293 aa16.05■□□□□ 0.16
SHKBP1-219ENST00000599575 CROCCP2Q86T23 111 aa16.05■□□□□ 0.16
SHKBP1-219ENST00000599575 ADGRF3Q8IZF5 1079 aa16.05■□□□□ 0.16
SHKBP1-219ENST00000599575 CHCHD4Q8N4Q1 142 aa16.05■□□□□ 0.16
SHKBP1-219ENST00000599575 ACMSDQ8TDX5 336 aa16.05■□□□□ 0.16
SHKBP1-219ENST00000599575 RSC1A1Q92681 617 aa16.05■□□□□ 0.16
SHKBP1-219ENST00000599575 NUDT22Q9BRQ3 303 aa16.05■□□□□ 0.16
SHKBP1-219ENST00000599575 CTNNAL1Q9UBT7 734 aa16.05■□□□□ 0.16
SHKBP1-219ENST00000599575 POMT2Q9UKY4 750 aa16.05■□□□□ 0.16
SHKBP1-219ENST00000599575 WASF3Q9UPY6 502 aa16.05■□□□□ 0.16
SHKBP1-219ENST00000599575 A0A096LPK6 155 aa16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 IGHV5-10-1A0A0J9YXX1 117 aa16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 PIPSLA2A3N6 862 aa16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 TLCD2A6NGC4 264 aa16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 PHGDHO43175 533 aaKnown RBP16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 MAP3K7O43318 606 aa16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 CSO75390 466 aaKnown RBP16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 C2P06681 752 aa16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 CHRM5P08912 532 aaPredicted RBP16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 LTA4HP09960 611 aaKnown RBP16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 TPBGLP0DKB5 382 aa16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 CCND1P24385 295 aa16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 GCAP28676 217 aa16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 MLLT3P42568 568 aaPredicted RBP16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 HNMTP50135 292 aa16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 FOXK2Q01167 660 aa16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 CFHR1Q03591 330 aa16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 IFFO1Q0D2I5 559 aa16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 BMPR2Q13873 1038 aa16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 EEF1AKMT2Q5JPI9 291 aaKnown RBP16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 KLC3Q6P597 504 aa16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 ZNF574Q6ZN55 896 aaPredicted RBP16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 ARHGAP22Q7Z5H3 698 aa16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 STAG3L4Q8TBR4 150 aa16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 ANKRD49Q8WVL7 239 aa16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 SMPDL3AQ92484 453 aa16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 CMKLR1Q99788 373 aa16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 TMEM109Q9BVC6 243 aa16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 C1GALT1Q9NS00 363 aa16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 ATXN7L1Q9ULK2 861 aaPredicted RBP16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 RUVBL2Q9Y230 463 aaKnown RBP16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 PDE10AQ9Y233 779 aa16.04■□□□□ 0.16
SHKBP1-219ENST00000599575 ASXL3Q9C0F0 2248 aa16.03■□□□□ 0.16
SHKBP1-219ENST00000599575 TRIM49D1C9J1S8 452 aa16.03■□□□□ 0.16
SHKBP1-219ENST00000599575 BTN3A3O00478 584 aa16.03■□□□□ 0.16
SHKBP1-219ENST00000599575 BTN3A1O00481 513 aa16.03■□□□□ 0.16
SHKBP1-219ENST00000599575 KLHL2O95198 593 aa16.03■□□□□ 0.16
SHKBP1-219ENST00000599575 SLC16A8O95907 504 aa16.03■□□□□ 0.16
SHKBP1-219ENST00000599575 HOXB3P14651 431 aaPredicted RBP16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms