RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 PKLRP30613 574 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 OTX2P32243 289 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 CCR7P32248 378 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 FOLR3P41439 243 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 TTPAP49638 278 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 RAB28P51157 221 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 DCDP81605 110 aaKnown RBP9.45□□□□□ -0.9
VRK3-216ENST00000599342 ATP1A4Q13733 1029 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 NADK2Q4G0N4 442 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 C1orf189Q5VU69 101 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 PAPD7Q5XG87 772 aaKnown RBP9.45□□□□□ -0.9
VRK3-216ENST00000599342 ZNF385CQ66K41 422 aaPredicted RBP9.45□□□□□ -0.9
VRK3-216ENST00000599342 PTRHD1Q6GMV3 140 aaKnown RBP9.45□□□□□ -0.9
VRK3-216ENST00000599342 TTC23LQ6PF05 361 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 UNC5DQ6UXZ4 953 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 ZNF534Q76KX8 674 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 GSTA5Q7RTV2 222 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 PRUNE1Q86TP1 453 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 HPS6Q86YV9 775 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 DCUN1D3Q8IWE4 304 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 RAB42Q8N4Z0 105 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 ZBTB2Q8N680 514 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 OTUD6BQ8N6M0 293 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 ZNF655Q8N720 491 aaPredicted RBP9.45□□□□□ -0.9
VRK3-216ENST00000599342 FDCSPQ8NFU4 85 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 CFAP61Q8NHU2 1237 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 SLC22A18Q96BI1 424 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 FER1L6-AS2Q96M78 137 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 ZNF778Q96MU6 729 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 IP6K3Q96PC2 410 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 PANX3Q96QZ0 392 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 NDC1Q9BTX1 674 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 CARD6Q9BX69 1037 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 RAB11FIP5Q9BXF6 653 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 AP1M1Q9BXS5 423 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 CHRNA10Q9GZZ6 450 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 SPRTNQ9H040 489 aaPredicted RBP9.45□□□□□ -0.9
VRK3-216ENST00000599342 MLXIPLQ9NP71 852 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 EIF2B3Q9NR50 452 aaKnown RBP9.45□□□□□ -0.9
VRK3-216ENST00000599342 INTS7Q9NVH2 962 aaKnown RBP9.45□□□□□ -0.9
VRK3-216ENST00000599342 GPR83Q9NYM4 423 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.45□□□□□ -0.9
VRK3-216ENST00000599342 IFT80Q9P2H3 777 aaPredicted RBP9.45□□□□□ -0.9
VRK3-216ENST00000599342 PLCL2Q9UPR0 1127 aa9.45□□□□□ -0.9
VRK3-216ENST00000599342 PTRH2Q9Y3E5 179 aaKnown RBP9.45□□□□□ -0.9
VRK3-216ENST00000599342 MYO18BQ8IUG5 2567 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 IQCF5A8MTL0 148 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 AP3B1O00203 1094 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 PEX12O00623 359 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 NDUFS3O75489 264 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 CEACAM4O75871 244 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 S1PR4O95977 384 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 IGHEP01854 428 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 ZSCAN5DPP0CG00 497 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 TPBGLP0DKB5 382 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 CBSLP0DN79 551 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 MAGP20916 626 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 CD9P21926 228 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 CBSP35520 551 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 SESN2P58004 480 aaPredicted RBP9.44□□□□□ -0.9
VRK3-216ENST00000599342 SEMA3AQ14563 771 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 SSPNQ14714 243 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 ZIC1Q15915 447 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 CCNG2Q16589 344 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 KYNUQ16719 465 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 PCID2Q5JVF3 399 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 MEI1Q5TIA1 1274 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 C4orf22Q6V702 233 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 MRGPREQ86SM8 312 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 LDB1Q86U70 411 aaPredicted RBP9.44□□□□□ -0.9
VRK3-216ENST00000599342 TAX1BP1Q86VP1 789 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 VRK3Q8IV63 474 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 GLIS1Q8NBF1 620 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 CLEC1AQ8NC01 280 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 FLVCR1-AS1Q8TAF5 88 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 LKAAEAR1Q8TD35 194 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 DENND1AQ8TEH3 1009 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 SKA2Q8WVK7 121 aaPredicted RBP9.44□□□□□ -0.9
VRK3-216ENST00000599342 MAIP1Q8WWC4 291 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 DLG3Q92796 817 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 GBP5Q96PP8 586 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 NUDT9Q9BW91 350 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 IL22Q9GZX6 179 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 SLAMF7Q9NQ25 335 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 CHRAC1Q9NRG0 131 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 MAP10Q9P2G4 905 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 DHCR7Q9UBM7 475 aaKnown RBP9.44□□□□□ -0.9
VRK3-216ENST00000599342 GNPTGQ9UJJ9 305 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 SLC39A10Q9ULF5 831 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 ZKSCAN5Q9Y2L8 839 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 MRFAP1Q9Y605 127 aa9.44□□□□□ -0.9
VRK3-216ENST00000599342 TLN1Q9Y490 2541 aaKnown RBP9.43□□□□□ -0.9
VRK3-216ENST00000599342 H3BMH7 237 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 KPNA5O15131 536 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 PFDN6O15212 129 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 CD3EAPO15446 510 aaKnown RBP9.43□□□□□ -0.9
VRK3-216ENST00000599342 HCRTR1O43613 425 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 KLHL41O60662 606 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 GPC4O75487 556 aa9.43□□□□□ -0.9
VRK3-216ENST00000599342 KLF7O75840 302 aaPredicted RBP9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms