RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 GDF10P55107 478 aa13.13□□□□□ -0.31
TRIM28-211ENST00000597968 CHAF1BQ13112 559 aa13.13□□□□□ -0.31
TRIM28-211ENST00000597968 PTCHD3Q3KNS1 767 aa13.13□□□□□ -0.31
TRIM28-211ENST00000597968 NADK2Q4G0N4 442 aa13.13□□□□□ -0.31
TRIM28-211ENST00000597968 MRPL14Q6P1L8 145 aaKnown RBP13.13□□□□□ -0.31
TRIM28-211ENST00000597968 UNC5DQ6UXZ4 953 aa13.13□□□□□ -0.31
TRIM28-211ENST00000597968 C4orf22Q6V702 233 aa13.13□□□□□ -0.31
TRIM28-211ENST00000597968 MICALCLQ6ZW33 695 aa13.13□□□□□ -0.31
TRIM28-211ENST00000597968 TMEM139Q8IV31 216 aa13.13□□□□□ -0.31
TRIM28-211ENST00000597968 SPC24Q8NBT2 197 aa13.13□□□□□ -0.31
TRIM28-211ENST00000597968 OR13J1Q8NGT2 312 aa13.13□□□□□ -0.31
TRIM28-211ENST00000597968 OR4L1Q8NH43 312 aa13.13□□□□□ -0.31
TRIM28-211ENST00000597968 FLVCR1-AS1Q8TAF5 88 aa13.13□□□□□ -0.31
TRIM28-211ENST00000597968 COG1Q8WTW3 980 aa13.13□□□□□ -0.31
TRIM28-211ENST00000597968 FKBP10Q96AY3 582 aa13.13□□□□□ -0.31
TRIM28-211ENST00000597968 VPS50Q96JG6 964 aa13.13□□□□□ -0.31
TRIM28-211ENST00000597968 DESI2Q9BSY9 194 aa13.13□□□□□ -0.31
TRIM28-211ENST00000597968 NDC1Q9BTX1 674 aa13.13□□□□□ -0.31
TRIM28-211ENST00000597968 NUDT9Q9BW91 350 aa13.13□□□□□ -0.31
TRIM28-211ENST00000597968 FAM60AQ9NP50 221 aa13.13□□□□□ -0.31
TRIM28-211ENST00000597968 IL1RAPL1Q9NZN1 696 aa13.13□□□□□ -0.31
TRIM28-211ENST00000597968 IFT80Q9P2H3 777 aaPredicted RBP13.13□□□□□ -0.31
TRIM28-211ENST00000597968 ANAPC5Q9UJX4 755 aa13.13□□□□□ -0.31
TRIM28-211ENST00000597968 PACSIN2Q9UNF0 486 aaPredicted RBP13.13□□□□□ -0.31
TRIM28-211ENST00000597968 NAV2Q8IVL1 2488 aa13.12□□□□□ -0.31
TRIM28-211ENST00000597968 CCDC162PA2VCL2 907 aa13.12□□□□□ -0.31
TRIM28-211ENST00000597968 ZNF185O15231 689 aa13.12□□□□□ -0.31
TRIM28-211ENST00000597968 GPC4O75487 556 aa13.12□□□□□ -0.31
TRIM28-211ENST00000597968 AGFG2O95081 481 aa13.12□□□□□ -0.31
TRIM28-211ENST00000597968 PVRP15151 417 aa13.12□□□□□ -0.31
TRIM28-211ENST00000597968 TTPAP49638 278 aa13.12□□□□□ -0.31
TRIM28-211ENST00000597968 ATP1A4Q13733 1029 aa13.12□□□□□ -0.31
TRIM28-211ENST00000597968 MYBPC3Q14896 1274 aa13.12□□□□□ -0.31
TRIM28-211ENST00000597968 OASLQ15646 514 aaKnown RBP13.12□□□□□ -0.31
TRIM28-211ENST00000597968 INPP5JQ15735 1006 aaPredicted RBP13.12□□□□□ -0.31
TRIM28-211ENST00000597968 KYNUQ16719 465 aa13.12□□□□□ -0.31
TRIM28-211ENST00000597968 FASTKD1Q53R41 847 aaKnown RBP13.12□□□□□ -0.31
TRIM28-211ENST00000597968 ZC3H12BQ5HYM0 836 aaKnown RBP13.12□□□□□ -0.31
TRIM28-211ENST00000597968 TCTE1Q5JU00 501 aa13.12□□□□□ -0.31
TRIM28-211ENST00000597968 DCAF10Q5QP82 559 aa13.12□□□□□ -0.31
TRIM28-211ENST00000597968 TSTD2Q5T7W7 516 aa13.12□□□□□ -0.31
TRIM28-211ENST00000597968 ARMC3Q5W041 872 aa13.12□□□□□ -0.31
TRIM28-211ENST00000597968 MRGPREQ86SM8 312 aa13.12□□□□□ -0.31
TRIM28-211ENST00000597968 LRRC6Q86X45 466 aa13.12□□□□□ -0.31
TRIM28-211ENST00000597968 DCUN1D3Q8IWE4 304 aa13.12□□□□□ -0.31
TRIM28-211ENST00000597968 MPP5Q8N3R9 675 aa13.12□□□□□ -0.31
TRIM28-211ENST00000597968 DNAJC22Q8N4W6 341 aa13.12□□□□□ -0.31
TRIM28-211ENST00000597968 XKR8Q9H6D3 395 aa13.12□□□□□ -0.31
TRIM28-211ENST00000597968 WDR54Q9H977 334 aa13.12□□□□□ -0.31
TRIM28-211ENST00000597968 IMPACTQ9P2X3 320 aa13.12□□□□□ -0.31
TRIM28-211ENST00000597968 PRSS21Q9Y6M0 314 aa13.12□□□□□ -0.31
TRIM28-211ENST00000597968 E7EVH7 732 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 LIASO43766 372 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 SLCO2B1O94956 709 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 FTCDO95954 541 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 APOA4P06727 396 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 PRSS56P0CW18 603 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 PKLRP30613 574 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 GCGRP47871 477 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 PRAMEP78395 509 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 NAA25Q14CX7 972 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 ZIC1Q15915 447 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 NKAIN1Q4KMZ8 207 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 SEL1L2Q5TEA6 688 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 MLIPQ5VWP3 458 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 SLC6A19Q695T7 634 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 TTC23LQ6PF05 361 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 PPP1R21Q6ZMI0 780 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 IQCKQ8N0W5 287 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 GALNT16Q8N428 558 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 RAB42Q8N4Z0 105 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 RBMXL3Q8N7X1 1067 aaKnown RBP13.11□□□□□ -0.31
TRIM28-211ENST00000597968 Q8NA96 180 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 OR52K1Q8NGK4 314 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 SSC4DQ8WTU2 575 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 HDAC10Q969S8 669 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 ZUFSPQ96AP4 578 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 PANX3Q96QZ0 392 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 TSGA10Q9BZW7 698 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 SLC26A1Q9H2B4 701 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 ETNK1Q9HBU6 452 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 MRM3Q9HC36 420 aaKnown RBP13.11□□□□□ -0.31
TRIM28-211ENST00000597968 CASS4Q9NQ75 786 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 SPHK1Q9NYA1 384 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 EURLQ9NYK6 297 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 PAK5Q9P286 719 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 NXT1Q9UKK6 140 aaKnown RBP13.11□□□□□ -0.31
TRIM28-211ENST00000597968 B3GNT3Q9Y2A9 372 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 TDRKHQ9Y2W6 561 aaKnown RBP13.11□□□□□ -0.31
TRIM28-211ENST00000597968 PTRH2Q9Y3E5 179 aaKnown RBP13.11□□□□□ -0.31
TRIM28-211ENST00000597968 KLK4Q9Y5K2 254 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 DOPEY2Q9Y3R5 2298 aa13.11□□□□□ -0.31
TRIM28-211ENST00000597968 NBASA2RRP1 2371 aa13.1□□□□□ -0.31
TRIM28-211ENST00000597968 BLACEA4D250 179 aa13.1□□□□□ -0.31
TRIM28-211ENST00000597968 ISM1B1AKI9 464 aa13.1□□□□□ -0.31
TRIM28-211ENST00000597968 TARM1B6A8C7 271 aa13.1□□□□□ -0.31
TRIM28-211ENST00000597968 PRMT5O14744 637 aaPredicted RBP13.1□□□□□ -0.31
TRIM28-211ENST00000597968 SRPX2O60687 465 aaPredicted RBP13.1□□□□□ -0.31
TRIM28-211ENST00000597968 GOT2P00505 430 aaKnown RBP13.1□□□□□ -0.31
TRIM28-211ENST00000597968 TPBGLP0DKB5 382 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 98.9 ms