RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	FOLR3	P41439	243 aa		10.15	□□□□□ -0.78
LSM4-205	ENST00000597776	DCD	P81605	110 aa	Known RBP	10.15	□□□□□ -0.78
LSM4-205	ENST00000597776	ITIH4	Q14624	930 aa		10.15	□□□□□ -0.78
LSM4-205	ENST00000597776	EIF2S3L	Q2VIR3	472 aa	Known RBP	10.15	□□□□□ -0.78
LSM4-205	ENST00000597776	P3H1	Q32P28	736 aa		10.15	□□□□□ -0.78
LSM4-205	ENST00000597776	PLEKHN1	Q494U1	663 aa	Predicted RBP	10.15	□□□□□ -0.78
LSM4-205	ENST00000597776	VWA5B1	Q5TIE3	1220 aa		10.15	□□□□□ -0.78
LSM4-205	ENST00000597776	RHBDD2	Q6NTF9	364 aa		10.15	□□□□□ -0.78
LSM4-205	ENST00000597776	KIAA1328	Q86T90	577 aa		10.15	□□□□□ -0.78
LSM4-205	ENST00000597776	LURAP1L	Q8IV03	231 aa		10.15	□□□□□ -0.78
LSM4-205	ENST00000597776	VRK3	Q8IV63	474 aa		10.15	□□□□□ -0.78
LSM4-205	ENST00000597776	TBC1D21	Q8IYX1	336 aa		10.15	□□□□□ -0.78
LSM4-205	ENST00000597776	C2orf73	Q8N5S3	287 aa	Predicted RBP	10.15	□□□□□ -0.78
LSM4-205	ENST00000597776	TTC13	Q8NBP0	860 aa		10.15	□□□□□ -0.78
LSM4-205	ENST00000597776	OR13J1	Q8NGT2	312 aa		10.15	□□□□□ -0.78
LSM4-205	ENST00000597776	OR5K2	Q8NHB8	316 aa		10.15	□□□□□ -0.78
LSM4-205	ENST00000597776	LKAAEAR1	Q8TD35	194 aa		10.15	□□□□□ -0.78
LSM4-205	ENST00000597776	SSC4D	Q8WTU2	575 aa		10.15	□□□□□ -0.78
LSM4-205	ENST00000597776	HDAC10	Q969S8	669 aa		10.15	□□□□□ -0.78
LSM4-205	ENST00000597776	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	10.15	□□□□□ -0.78
LSM4-205	ENST00000597776	PNPLA2	Q96AD5	504 aa		10.15	□□□□□ -0.78
LSM4-205	ENST00000597776	DHRS4	Q9BTZ2	278 aa		10.15	□□□□□ -0.78
LSM4-205	ENST00000597776	OR6C2	Q9NZP2	312 aa		10.15	□□□□□ -0.78
LSM4-205	ENST00000597776	POLG2	Q9UHN1	485 aa		10.15	□□□□□ -0.78
LSM4-205	ENST00000597776	GPN3	Q9UHW5	284 aa	Predicted RBP	10.15	□□□□□ -0.78
LSM4-205	ENST00000597776	AP1M2	Q9Y6Q5	423 aa		10.15	□□□□□ -0.78
LSM4-205	ENST00000597776	ICE1	Q9Y2F5	2266 aa		10.15	□□□□□ -0.78
LSM4-205	ENST00000597776	UNC79	Q9P2D8	2635 aa		10.15	□□□□□ -0.79
LSM4-205	ENST00000597776	PIKFYVE	Q9Y2I7	2098 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	QSOX1	O00391	747 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	PSMD3	O43242	534 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	GOT2	P00505	430 aa	Known RBP	10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	UMOD	P07911	640 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	OR56A5	P0C7T3	313 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	PKLR	P30613	574 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	GRIA1	P42261	906 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	SEMA3A	Q14563	771 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	SSPN	Q14714	243 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	NR6A1	Q15406	480 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	SLC5A12	Q1EHB4	618 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	NKAIN1	Q4KMZ8	207 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	DCAF10	Q5QP82	559 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	PPP1R32	Q7Z5V6	425 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	PRUNE1	Q86TP1	453 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	TAX1BP1	Q86VP1	789 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	HPS6	Q86YV9	775 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	DNAJC22	Q8N4W6	341 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	CISD2	Q8N5K1	135 aa	Known RBP	10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	UBL4B	Q8N7F7	174 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	DNAAF3	Q8N9W5	541 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	LINC01555	Q8NAE3	123 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	CLEC1A	Q8NC01	280 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	OR2Y1	Q8NGV0	311 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	PRR7	Q8TB68	274 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	PROKR1	Q8TCW9	393 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	ZNF778	Q96MU6	729 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	IL17F	Q96PD4	163 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	C17orf62	Q9BQA9	187 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	DESI2	Q9BSY9	194 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	CHRNA10	Q9GZZ6	450 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	SLC22A11	Q9NSA0	550 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	TXLNG	Q9NUQ3	528 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	P4HTM	Q9NXG6	502 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	NDOR1	Q9UHB4	597 aa		10.14	□□□□□ -0.79
LSM4-205	ENST00000597776	IQCF5	A8MTL0	148 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	MIF4GD	A9UHW6	222 aa	Known RBP	10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	PEX12	O00623	359 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	ALOX12B	O75342	701 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	ITGAX	P20702	1163 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	MAG	P20916	626 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	CCR7	P32248	378 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	HSPA14	Q0VDF9	509 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	CDH17	Q12864	832 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	MYBPC3	Q14896	1274 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	KIR2DS3	Q14952	304 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	TSTD2	Q5T7W7	516 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	MRPL14	Q6P1L8	145 aa	Known RBP	10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	TLDC1	Q6P9B6	456 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	AFTPH	Q6ULP2	937 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	PPP1R21	Q6ZMI0	780 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	ZNF534	Q76KX8	674 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	LINC00523	Q86TU6	105 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	LDB1	Q86U70	411 aa	Predicted RBP	10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	SLC22A15	Q8IZD6	547 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	GALNT16	Q8N428	558 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	OR6P1	Q8NGX9	317 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	CFAP61	Q8NHU2	1237 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	INPP5D	Q92835	1189 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	SNRNP40	Q96DI7	357 aa	Known RBP	10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	MRFAP1L1	Q96HT8	127 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	FER1L6-AS2	Q96M78	137 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	IP6K3	Q96PC2	410 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	NDC1	Q9BTX1	674 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	MENT	Q9BUN1	341 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	AP1M1	Q9BXS5	423 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	SLC29A3	Q9BZD2	475 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	ETNK1	Q9HBU6	452 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	ZBTB20	Q9HC78	741 aa	Predicted RBP	10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	ASF1B	Q9NVP2	202 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	EURL	Q9NYK6	297 aa		10.13	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 27 ms