RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 ZC3H14Q6PJT7 736 aaKnown RBP14.83□□□□□ -0.04
TRIM28-209ENST00000597423 AGTRAPQ6RW13 159 aa14.83□□□□□ -0.04
TRIM28-209ENST00000597423 SYTL1Q8IYJ3 562 aa14.83□□□□□ -0.04
TRIM28-209ENST00000597423 FAM46DQ8NEK8 389 aa14.83□□□□□ -0.04
TRIM28-209ENST00000597423 OR5AR1Q8NGP9 310 aa14.83□□□□□ -0.04
TRIM28-209ENST00000597423 BCAS4Q8TDM0 211 aa14.83□□□□□ -0.04
TRIM28-209ENST00000597423 ZNF483Q8TF39 744 aaPredicted RBP14.83□□□□□ -0.04
TRIM28-209ENST00000597423 SETD7Q8WTS6 366 aaKnown RBP14.83□□□□□ -0.04
TRIM28-209ENST00000597423 LOXL4Q96JB6 756 aa14.83□□□□□ -0.04
TRIM28-209ENST00000597423 PCBD2Q9H0N5 130 aa14.83□□□□□ -0.04
TRIM28-209ENST00000597423 GSTO2Q9H4Y5 243 aa14.83□□□□□ -0.04
TRIM28-209ENST00000597423 SLCO1B3Q9NPD5 702 aa14.83□□□□□ -0.04
TRIM28-209ENST00000597423 PFDN4Q9NQP4 134 aa14.83□□□□□ -0.04
TRIM28-209ENST00000597423 STOX2Q9P2F5 926 aaPredicted RBP14.83□□□□□ -0.04
TRIM28-209ENST00000597423 VTI1BQ9UEU0 232 aa14.83□□□□□ -0.04
TRIM28-209ENST00000597423 RAB23Q9ULC3 237 aa14.83□□□□□ -0.04
TRIM28-209ENST00000597423 WDR37Q9Y2I8 494 aa14.83□□□□□ -0.04
TRIM28-209ENST00000597423 SLCO1B1Q9Y6L6 691 aa14.83□□□□□ -0.04
TRIM28-209ENST00000597423 NCOR1O75376 2440 aa14.83□□□□□ -0.04
TRIM28-209ENST00000597423 PLXND1Q9Y4D7 1925 aa14.82□□□□□ -0.04
TRIM28-209ENST00000597423 PIKFYVEQ9Y2I7 2098 aa14.82□□□□□ -0.04
TRIM28-209ENST00000597423 A0A1B0GVT2 93 aa14.82□□□□□ -0.04
TRIM28-209ENST00000597423 E2F3O00716 465 aa14.82□□□□□ -0.04
TRIM28-209ENST00000597423 ITM2AO43736 263 aa14.82□□□□□ -0.04
TRIM28-209ENST00000597423 OTCP00480 354 aa14.82□□□□□ -0.04
TRIM28-209ENST00000597423 ANXA6P08133 673 aa14.82□□□□□ -0.04
TRIM28-209ENST00000597423 XRCC1P18887 633 aaPredicted RBP14.82□□□□□ -0.04
TRIM28-209ENST00000597423 AGTR2P50052 363 aa14.82□□□□□ -0.04
TRIM28-209ENST00000597423 RPL14P50914 215 aaKnown RBP14.82□□□□□ -0.04
TRIM28-209ENST00000597423 PNLIPRP1P54315 467 aa14.82□□□□□ -0.04
TRIM28-209ENST00000597423 EEF1AKMT2Q5JPI9 291 aaKnown RBP14.82□□□□□ -0.04
TRIM28-209ENST00000597423 IL27RAQ6UWB1 636 aa14.82□□□□□ -0.04
TRIM28-209ENST00000597423 PRR23BQ6ZRT6 265 aa14.82□□□□□ -0.04
TRIM28-209ENST00000597423 SLC9B2Q86UD5 537 aa14.82□□□□□ -0.04
TRIM28-209ENST00000597423 NRROSQ86YC3 692 aa14.82□□□□□ -0.04
TRIM28-209ENST00000597423 RBM12BQ8IXT5 1001 aaKnown RBP14.82□□□□□ -0.04
TRIM28-209ENST00000597423 CHCHD4Q8N4Q1 142 aa14.82□□□□□ -0.04
TRIM28-209ENST00000597423 TEX9Q8N6V9 391 aa14.82□□□□□ -0.04
TRIM28-209ENST00000597423 SNX31Q8N9S9 440 aa14.82□□□□□ -0.04
TRIM28-209ENST00000597423 CCL4L1Q8NHW4 92 aa14.82□□□□□ -0.04
TRIM28-209ENST00000597423 PIWIL2Q8TC59 973 aaKnown RBP14.82□□□□□ -0.04
TRIM28-209ENST00000597423 LMX1AQ8TE12 382 aa14.82□□□□□ -0.04
TRIM28-209ENST00000597423 TRPC4APQ8TEL6 797 aa14.82□□□□□ -0.04
TRIM28-209ENST00000597423 CAMK1GQ96NX5 476 aa14.82□□□□□ -0.04
TRIM28-209ENST00000597423 MIPEPQ99797 713 aa14.82□□□□□ -0.04
TRIM28-209ENST00000597423 STN1Q9H668 368 aaKnown RBP14.82□□□□□ -0.04
TRIM28-209ENST00000597423 DNAJC11Q9NVH1 559 aa14.82□□□□□ -0.04
TRIM28-209ENST00000597423 KLF15Q9UIH9 416 aa14.82□□□□□ -0.04
TRIM28-209ENST00000597423 PCTPQ9UKL6 214 aa14.82□□□□□ -0.04
TRIM28-209ENST00000597423 PNMA8BQ9ULN7 279 aaPredicted RBP14.82□□□□□ -0.04
TRIM28-209ENST00000597423 CFAP20Q9Y6A4 193 aaKnown RBP14.82□□□□□ -0.04
TRIM28-209ENST00000597423 CSNK1G3Q9Y6M4 447 aa14.82□□□□□ -0.04
TRIM28-209ENST00000597423 BDP1A6H8Y1 2624 aa14.81□□□□□ -0.04
TRIM28-209ENST00000597423 CACNA1IQ9P0X4 2223 aa14.81□□□□□ -0.04
TRIM28-209ENST00000597423 YKT6O15498 198 aa14.81□□□□□ -0.04
TRIM28-209ENST00000597423 AQP9O43315 295 aa14.81□□□□□ -0.04
TRIM28-209ENST00000597423 LYPLA1O75608 230 aaPredicted RBP14.81□□□□□ -0.04
TRIM28-209ENST00000597423 WDR47O94967 919 aa14.81□□□□□ -0.04
TRIM28-209ENST00000597423 SLC16A8O95907 504 aa14.81□□□□□ -0.04
TRIM28-209ENST00000597423 VIPP01282 170 aa14.81□□□□□ -0.04
TRIM28-209ENST00000597423 ARL1P40616 181 aaPredicted RBP14.81□□□□□ -0.04
TRIM28-209ENST00000597423 CTSKP43235 329 aa14.81□□□□□ -0.04
TRIM28-209ENST00000597423 SLC6A12P48065 614 aa14.81□□□□□ -0.04
TRIM28-209ENST00000597423 RXRGP48443 463 aa14.81□□□□□ -0.04
TRIM28-209ENST00000597423 CDH13P55290 713 aa14.81□□□□□ -0.04
TRIM28-209ENST00000597423 PRKG2Q13237 762 aa14.81□□□□□ -0.04
TRIM28-209ENST00000597423 C1orf61Q13536 156 aa14.81□□□□□ -0.04
TRIM28-209ENST00000597423 NAE1Q13564 534 aa14.81□□□□□ -0.04
TRIM28-209ENST00000597423 KIF19Q2TAC6 998 aa14.81□□□□□ -0.04
TRIM28-209ENST00000597423 PTCHD3Q3KNS1 767 aa14.81□□□□□ -0.04
TRIM28-209ENST00000597423 PEAR1Q5VY43 1037 aaPredicted RBP14.81□□□□□ -0.04
TRIM28-209ENST00000597423 EFL1Q7Z2Z2 1120 aaKnown RBP14.81□□□□□ -0.04
TRIM28-209ENST00000597423 CUZD1Q86UP6 607 aa14.81□□□□□ -0.04
TRIM28-209ENST00000597423 KLHDC8AQ8IYD2 350 aa14.81□□□□□ -0.04
TRIM28-209ENST00000597423 CLYBLQ8N0X4 340 aa14.81□□□□□ -0.04
TRIM28-209ENST00000597423 OR56A3Q8NH54 315 aa14.81□□□□□ -0.04
TRIM28-209ENST00000597423 SH3KBP1Q96B97 665 aa14.81□□□□□ -0.04
TRIM28-209ENST00000597423 MED8Q96G25 268 aa14.81□□□□□ -0.04
TRIM28-209ENST00000597423 ELAC2Q9BQ52 826 aaKnown RBP14.81□□□□□ -0.04
TRIM28-209ENST00000597423 LRRC61Q9BV99 259 aa14.81□□□□□ -0.04
TRIM28-209ENST00000597423 ATG10Q9H0Y0 220 aa14.81□□□□□ -0.04
TRIM28-209ENST00000597423 TCEAL2Q9H3H9 227 aaPredicted RBP14.81□□□□□ -0.04
TRIM28-209ENST00000597423 KIR3DX1Q9H7L2 352 aa14.81□□□□□ -0.04
TRIM28-209ENST00000597423 IPPKQ9H8X2 491 aa14.81□□□□□ -0.04
TRIM28-209ENST00000597423 MID1IP1Q9NPA3 183 aa14.81□□□□□ -0.04
TRIM28-209ENST00000597423 SEMA4BQ9NPR2 832 aaPredicted RBP14.81□□□□□ -0.04
TRIM28-209ENST00000597423 HAO1Q9UJM8 370 aa14.81□□□□□ -0.04
TRIM28-209ENST00000597423 KCNE2Q9Y6J6 123 aa14.81□□□□□ -0.04
TRIM28-209ENST00000597423 DOCK9Q9BZ29 2069 aa14.8□□□□□ -0.04
TRIM28-209ENST00000597423 A6NCN8 305 aa14.8□□□□□ -0.04
TRIM28-209ENST00000597423 OR52A4PA6NMU1 304 aa14.8□□□□□ -0.04
TRIM28-209ENST00000597423 LMO7DNF2Z398 122 aa14.8□□□□□ -0.04
TRIM28-209ENST00000597423 HGSO14964 777 aaPredicted RBP14.8□□□□□ -0.04
TRIM28-209ENST00000597423 CLGNO14967 610 aa14.8□□□□□ -0.04
TRIM28-209ENST00000597423 ESRRBO95718 433 aa14.8□□□□□ -0.04
TRIM28-209ENST00000597423 CHEK2O96017 543 aa14.8□□□□□ -0.04
TRIM28-209ENST00000597423 SYPP08247 313 aa14.8□□□□□ -0.04
TRIM28-209ENST00000597423 FGF4P08620 206 aa14.8□□□□□ -0.04
TRIM28-209ENST00000597423 SHMT2P34897 504 aa14.8□□□□□ -0.04
TRIM28-209ENST00000597423 RAB28P51157 221 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms