RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	GPC4	O75487	556 aa		15.05	■□□□□ -0
DDX39A-209	ENST00000589318	ENO3	P13929	434 aa	Predicted RBP	15.05	■□□□□ -0
DDX39A-209	ENST00000589318	C5AR1	P21730	350 aa		15.05	■□□□□ -0
DDX39A-209	ENST00000589318	NAA20	P61599	178 aa		15.05	■□□□□ -0
DDX39A-209	ENST00000589318	RPS14	P62263	151 aa	Known RBP	15.05	■□□□□ -0
DDX39A-209	ENST00000589318	HSPA14	Q0VDF9	509 aa		15.05	■□□□□ -0
DDX39A-209	ENST00000589318	TMEM115	Q12893	351 aa	Predicted RBP	15.05	■□□□□ -0
DDX39A-209	ENST00000589318	LCP2	Q13094	533 aa		15.05	■□□□□ -0
DDX39A-209	ENST00000589318	SMAD4	Q13485	552 aa	Known RBP	15.05	■□□□□ -0
DDX39A-209	ENST00000589318	CLPP	Q16740	277 aa	Predicted RBP	15.05	■□□□□ -0
DDX39A-209	ENST00000589318	C18orf21	Q32NC0	220 aa	Predicted RBP	15.05	■□□□□ -0
DDX39A-209	ENST00000589318	PLEKHS1	Q5SXH7	462 aa		15.05	■□□□□ -0
DDX39A-209	ENST00000589318	CLEC6A	Q6EIG7	209 aa		15.05	■□□□□ -0
DDX39A-209	ENST00000589318	NIPAL1	Q6NVV3	410 aa		15.05	■□□□□ -0
DDX39A-209	ENST00000589318	PHYKPL	Q8IUZ5	450 aa		15.05	■□□□□ -0
DDX39A-209	ENST00000589318	CXorf40A	Q8TE69	158 aa		15.05	■□□□□ -0
DDX39A-209	ENST00000589318	CNBD2	Q96M20	576 aa		15.05	■□□□□ -0
DDX39A-209	ENST00000589318	RTKN	Q9BST9	563 aa		15.05	■□□□□ -0
DDX39A-209	ENST00000589318	ZNF225	Q9UK10	706 aa		15.05	■□□□□ -0
DDX39A-209	ENST00000589318	FUOM	A2VDF0	154 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	RAD51B	O15315	384 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	SYNCRIP	O60506	623 aa	Known RBP	15.04	■□□□□ -0
DDX39A-209	ENST00000589318	SNX2	O60749	519 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	BMP10	O95393	424 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	FGF4	P08620	206 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	THRA	P10827	490 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	COL9A1	P20849	921 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	PRLHR	P49683	370 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	TMED10	P49755	219 aa	Known RBP	15.04	■□□□□ -0
DDX39A-209	ENST00000589318	FOXA1	P55317	472 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	ESRRG	P62508	458 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	NUMA1	Q14980	2115 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	ZNF658B	Q4V348	819 aa	Predicted RBP	15.04	■□□□□ -0
DDX39A-209	ENST00000589318	METTL21C	Q5VZV1	264 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	15.04	■□□□□ -0
DDX39A-209	ENST00000589318	FRA10AC1	Q70Z53	315 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	RASGRP3	Q8IV61	690 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	OR2T3	Q8NH03	318 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	FAM131C	Q96AQ9	280 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	FAR2	Q96K12	515 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	UBE2Z	Q9H832	354 aa	Predicted RBP	15.04	■□□□□ -0
DDX39A-209	ENST00000589318	MEAF6	Q9HAF1	191 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	RDH14	Q9HBH5	336 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	MID1IP1	Q9NPA3	183 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	EIF2B4	Q9UI10	523 aa	Known RBP	15.04	■□□□□ -0
DDX39A-209	ENST00000589318	PTBP2	Q9UKA9	531 aa	Known RBP	15.04	■□□□□ -0
DDX39A-209	ENST00000589318	FIS1	Q9Y3D6	152 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318		A0A1W2PP55	124 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	MEI4	A8MW99	385 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	TAPBP	O15533	448 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	TSPAN6	O43657	245 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	LILRB5	O75023	590 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	FTH1	P02794	183 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	PRDX3	P30048	256 aa	Known RBP	15.04	■□□□□ -0
DDX39A-209	ENST00000589318	TTK	P33981	857 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	GPR1	P46091	355 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	BCAP31	P51572	246 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	TXNL4A	P83876	142 aa	Known RBP	15.04	■□□□□ -0
DDX39A-209	ENST00000589318	BOP1	Q14137	746 aa	Known RBP	15.04	■□□□□ -0
DDX39A-209	ENST00000589318	C16orf72	Q14CZ0	275 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	PCBP2	Q15366	365 aa	Known RBP eCLIP	15.04	■□□□□ -0	1e-6	■■■■■ 27.4
DDX39A-209	ENST00000589318	ZNF776	Q68DI1	518 aa	Predicted RBP	15.04	■□□□□ -0
DDX39A-209	ENST00000589318	RAET1G	Q6H3X3	334 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	HDDC3	Q8N4P3	179 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	GAS2L1	Q99501	681 aa	Predicted RBP	15.04	■□□□□ -0
DDX39A-209	ENST00000589318	ZNF385D	Q9H6B1	395 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	SEMA4B	Q9NPR2	832 aa	Predicted RBP	15.04	■□□□□ -0
DDX39A-209	ENST00000589318	GULP1	Q9UBP9	304 aa		15.04	■□□□□ -0
DDX39A-209	ENST00000589318	TDRKH	Q9Y2W6	561 aa	Known RBP	15.04	■□□□□ -0
DDX39A-209	ENST00000589318	ZFC3H1	O60293	1989 aa	Known RBP	15.03	■□□□□ -0
DDX39A-209	ENST00000589318	IGLON5	A6NGN9	336 aa		15.03	■□□□□ -0
DDX39A-209	ENST00000589318	TRPC5OS	A6NMA1	111 aa		15.03	■□□□□ -0
DDX39A-209	ENST00000589318	QSOX1	O00391	747 aa		15.03	■□□□□ -0
DDX39A-209	ENST00000589318	KPNA5	O15131	536 aa		15.03	■□□□□ -0
DDX39A-209	ENST00000589318	H6PD	O95479	791 aa		15.03	■□□□□ -0
DDX39A-209	ENST00000589318	OCM2	P0CE71	109 aa		15.03	■□□□□ -0
DDX39A-209	ENST00000589318	OCM	P0CE72	109 aa	Predicted RBP	15.03	■□□□□ -0
DDX39A-209	ENST00000589318	MPC1L	P0DKB6	136 aa		15.03	■□□□□ -0
DDX39A-209	ENST00000589318	ITGAX	P20702	1163 aa		15.03	■□□□□ -0
DDX39A-209	ENST00000589318	INA	Q16352	499 aa		15.03	■□□□□ -0
DDX39A-209	ENST00000589318	KANK2	Q63ZY3	851 aa		15.03	■□□□□ -0
DDX39A-209	ENST00000589318	C16orf89	Q6UX73	402 aa		15.03	■□□□□ -0
DDX39A-209	ENST00000589318	DEFB107A	Q8IZN7	70 aa		15.03	■□□□□ -0
DDX39A-209	ENST00000589318	PLA2G15	Q8NCC3	412 aa		15.03	■□□□□ -0
DDX39A-209	ENST00000589318	ASB11	Q8WXH4	323 aa		15.03	■□□□□ -0
DDX39A-209	ENST00000589318	ELMO1	Q92556	727 aa		15.03	■□□□□ -0
DDX39A-209	ENST00000589318	DNASE1L2	Q92874	299 aa		15.03	■□□□□ -0
DDX39A-209	ENST00000589318	EME1	Q96AY2	570 aa		15.03	■□□□□ -0
DDX39A-209	ENST00000589318	RHBDF1	Q96CC6	855 aa		15.03	■□□□□ -0
DDX39A-209	ENST00000589318	TMEM79	Q9BSE2	394 aa		15.03	■□□□□ -0
DDX39A-209	ENST00000589318	SLC6A17	Q9H1V8	727 aa		15.03	■□□□□ -0
DDX39A-209	ENST00000589318	EPHX3	Q9H6B9	360 aa		15.03	■□□□□ -0
DDX39A-209	ENST00000589318	C8orf33	Q9H7E9	229 aa	Predicted RBP	15.03	■□□□□ -0
DDX39A-209	ENST00000589318	CROT	Q9UKG9	612 aa		15.03	■□□□□ -0
DDX39A-209	ENST00000589318	DNAJC15	Q9Y5T4	150 aa		15.03	■□□□□ -0
DDX39A-209	ENST00000589318	SLCO2B1	O94956	709 aa		15.02	■□□□□ -0
DDX39A-209	ENST00000589318	KLF8	O95600	359 aa	Predicted RBP	15.02	■□□□□ -0
DDX39A-209	ENST00000589318	GUCA1C	O95843	209 aa		15.02	■□□□□ -0
DDX39A-209	ENST00000589318	ASGR2	P07307	311 aa		15.02	■□□□□ -0
DDX39A-209	ENST00000589318	NCF2	P19878	526 aa	Predicted RBP	15.02	■□□□□ -0

Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms