RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 C15orf38-AP3S2A0A0A6YYH1 394 aa13.82□□□□□ -0.2
LIG3-205ENST00000585941 MGAT4DA6NG13 374 aa13.82□□□□□ -0.2
LIG3-205ENST00000585941 CCDC85CA6NKD9 419 aa13.82□□□□□ -0.2
LIG3-205ENST00000585941 K7EQS6 105 aa13.82□□□□□ -0.2
LIG3-205ENST00000585941 PCDH8O95206 1070 aa13.82□□□□□ -0.2
LIG3-205ENST00000585941 STAMBPO95630 424 aa13.82□□□□□ -0.2
LIG3-205ENST00000585941 XRCC1P18887 633 aaPredicted RBP13.82□□□□□ -0.2
LIG3-205ENST00000585941 JAK1P23458 1154 aa13.82□□□□□ -0.2
LIG3-205ENST00000585941 PRPH2P23942 346 aa13.82□□□□□ -0.2
LIG3-205ENST00000585941 PBLDP30039 288 aaPredicted RBP13.82□□□□□ -0.2
LIG3-205ENST00000585941 SESN3P58005 492 aa13.82□□□□□ -0.2
LIG3-205ENST00000585941 PFN3P60673 137 aa13.82□□□□□ -0.2
LIG3-205ENST00000585941 UFM1P61960 85 aa13.82□□□□□ -0.2
LIG3-205ENST00000585941 ZXDCQ2QGD7 858 aaPredicted RBP13.82□□□□□ -0.2
LIG3-205ENST00000585941 CMPK2Q5EBM0 449 aa13.82□□□□□ -0.2
LIG3-205ENST00000585941 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.82□□□□□ -0.2
LIG3-205ENST00000585941 IL23RQ5VWK5 629 aa13.82□□□□□ -0.2
LIG3-205ENST00000585941 ICE2Q659A1 982 aa13.82□□□□□ -0.2
LIG3-205ENST00000585941 NEK5Q6P3R8 708 aa13.82□□□□□ -0.2
LIG3-205ENST00000585941 AGTRAPQ6RW13 159 aa13.82□□□□□ -0.2
LIG3-205ENST00000585941 CYP20A1Q6UW02 462 aa13.82□□□□□ -0.2
LIG3-205ENST00000585941 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.82□□□□□ -0.2
LIG3-205ENST00000585941 EP400NLQ6ZTU2 488 aa13.82□□□□□ -0.2
LIG3-205ENST00000585941 TRMT11Q7Z4G4 463 aaKnown RBP13.82□□□□□ -0.2
LIG3-205ENST00000585941 ARPINQ7Z6K5 226 aa13.82□□□□□ -0.2
LIG3-205ENST00000585941 RETREG3Q86VR2 466 aa13.82□□□□□ -0.2
LIG3-205ENST00000585941 ZFAND4Q86XD8 727 aa13.82□□□□□ -0.2
LIG3-205ENST00000585941 CFAP206Q8IYR0 622 aa13.82□□□□□ -0.2
LIG3-205ENST00000585941 HDDC3Q8N4P3 179 aa13.82□□□□□ -0.2
LIG3-205ENST00000585941 EFCAB3Q8N7B9 438 aa13.82□□□□□ -0.2
LIG3-205ENST00000585941 GLB1L3Q8NCI6 653 aaPredicted RBP13.82□□□□□ -0.2
LIG3-205ENST00000585941 PROKR1Q8TCW9 393 aa13.82□□□□□ -0.2
LIG3-205ENST00000585941 TACO1Q9BSH4 297 aaKnown RBP13.82□□□□□ -0.2
LIG3-205ENST00000585941 VCX3BQ9H321 246 aa13.82□□□□□ -0.2
LIG3-205ENST00000585941 LRTM1Q9HBL6 345 aa13.82□□□□□ -0.2
LIG3-205ENST00000585941 TRPV5Q9NQA5 729 aa13.82□□□□□ -0.2
LIG3-205ENST00000585941 C1orf109Q9NX04 203 aa13.82□□□□□ -0.2
LIG3-205ENST00000585941 STOX2Q9P2F5 926 aaPredicted RBP13.82□□□□□ -0.2
LIG3-205ENST00000585941 MAP10Q9P2G4 905 aa13.82□□□□□ -0.2
LIG3-205ENST00000585941 FAM8A1Q9UBU6 413 aa13.82□□□□□ -0.2
LIG3-205ENST00000585941 KCNE1BA0A087WTH5 132 aa13.81□□□□□ -0.2
LIG3-205ENST00000585941 IGLON5A6NGN9 336 aa13.81□□□□□ -0.2
LIG3-205ENST00000585941 ACOT8O14734 319 aa13.81□□□□□ -0.2
LIG3-205ENST00000585941 NVLO15381 856 aaKnown RBP13.81□□□□□ -0.2
LIG3-205ENST00000585941 POP7O75817 140 aaKnown RBP13.81□□□□□ -0.2
LIG3-205ENST00000585941 RSL1D1O76021 490 aaKnown RBP13.81□□□□□ -0.2
LIG3-205ENST00000585941 SORBS2O94875 1100 aaKnown RBP13.81□□□□□ -0.2
LIG3-205ENST00000585941 BAG2O95816 211 aa13.81□□□□□ -0.2
LIG3-205ENST00000585941 JUPP14923 745 aa13.81□□□□□ -0.2
LIG3-205ENST00000585941 ACPPP15309 386 aa13.81□□□□□ -0.2
LIG3-205ENST00000585941 ZNF8P17098 575 aaPredicted RBP13.81□□□□□ -0.2
LIG3-205ENST00000585941 MAPK1P28482 360 aa13.81□□□□□ -0.2
LIG3-205ENST00000585941 HNF4AP41235 474 aa13.81□□□□□ -0.2
LIG3-205ENST00000585941 WASP42768 502 aa13.81□□□□□ -0.2
LIG3-205ENST00000585941 PNLIPRP1P54315 467 aa13.81□□□□□ -0.2
LIG3-205ENST00000585941 TAS2R38P59533 333 aa13.81□□□□□ -0.2
LIG3-205ENST00000585941 RPS14P62263 151 aaKnown RBP13.81□□□□□ -0.2
LIG3-205ENST00000585941 COL19A1Q14993 1142 aa13.81□□□□□ -0.2
LIG3-205ENST00000585941 CPSF6Q16630 551 aaKnown RBP eCLIP13.81□□□□□ -0.2
LIG3-205ENST00000585941 RFTN2Q52LD8 501 aaPredicted RBP13.81□□□□□ -0.2
LIG3-205ENST00000585941 UNC5DQ6UXZ4 953 aa13.81□□□□□ -0.2
LIG3-205ENST00000585941 TRIM74Q86UV6 250 aa13.81□□□□□ -0.2
LIG3-205ENST00000585941 THOC6Q86W42 341 aaKnown RBP13.81□□□□□ -0.2
LIG3-205ENST00000585941 RGL4Q8IZJ4 473 aa13.81□□□□□ -0.2
LIG3-205ENST00000585941 SMRP1Q8NCR6 262 aa13.81□□□□□ -0.2
LIG3-205ENST00000585941 OR56A3Q8NH54 315 aa13.81□□□□□ -0.2
LIG3-205ENST00000585941 SELENOMQ8WWX9 145 aa13.81□□□□□ -0.2
LIG3-205ENST00000585941 LRRC58Q96CX6 371 aa13.81□□□□□ -0.2
LIG3-205ENST00000585941 GABRG3Q99928 467 aa13.81□□□□□ -0.2
LIG3-205ENST00000585941 ZDHHC4Q9NPG8 344 aa13.81□□□□□ -0.2
LIG3-205ENST00000585941 ITM2CQ9NQX7 267 aa13.81□□□□□ -0.2
LIG3-205ENST00000585941 GPRC5BQ9NZH0 403 aa13.81□□□□□ -0.2
LIG3-205ENST00000585941 ABCD2Q9UBJ2 740 aa13.81□□□□□ -0.2
LIG3-205ENST00000585941 GULP1Q9UBP9 304 aa13.81□□□□□ -0.2
LIG3-205ENST00000585941 CD300AQ9UGN4 299 aa13.81□□□□□ -0.2
LIG3-205ENST00000585941 SCML1Q9UN30 329 aa13.81□□□□□ -0.2
LIG3-205ENST00000585941 TMED5Q9Y3A6 229 aa13.81□□□□□ -0.2
LIG3-205ENST00000585941 CLGNO14967 610 aa13.8□□□□□ -0.2
LIG3-205ENST00000585941 MAP3K7O43318 606 aa13.8□□□□□ -0.2
LIG3-205ENST00000585941 SEC22BO75396 215 aa13.8□□□□□ -0.2
LIG3-205ENST00000585941 C1orf105O95561 183 aa13.8□□□□□ -0.2
LIG3-205ENST00000585941 G6PDP11413 515 aa13.8□□□□□ -0.2
LIG3-205ENST00000585941 TIE1P35590 1138 aa13.8□□□□□ -0.2
LIG3-205ENST00000585941 LTBRP36941 435 aa13.8□□□□□ -0.2
LIG3-205ENST00000585941 HALP42357 657 aa13.8□□□□□ -0.2
LIG3-205ENST00000585941 ZFP36L2P47974 494 aaKnown RBP13.8□□□□□ -0.2
LIG3-205ENST00000585941 SOX9P48436 509 aa13.8□□□□□ -0.2
LIG3-205ENST00000585941 RPL38P63173 70 aaKnown RBP13.8□□□□□ -0.2
LIG3-205ENST00000585941 RPS21P63220 83 aaKnown RBP13.8□□□□□ -0.2
LIG3-205ENST00000585941 IRF8Q02556 426 aa13.8□□□□□ -0.2
LIG3-205ENST00000585941 CHIT1Q13231 466 aa13.8□□□□□ -0.2
LIG3-205ENST00000585941 NFYCQ13952 458 aa13.8□□□□□ -0.2
LIG3-205ENST00000585941 MUM1Q2TAK8 710 aa13.8□□□□□ -0.2
LIG3-205ENST00000585941 FRG2Q64ET8 278 aa13.8□□□□□ -0.2
LIG3-205ENST00000585941 KIAA1161Q6NSJ0 714 aa13.8□□□□□ -0.2
LIG3-205ENST00000585941 LAYNQ6UX15 382 aa13.8□□□□□ -0.2
LIG3-205ENST00000585941 DHDDSQ86SQ9 333 aa13.8□□□□□ -0.2
LIG3-205ENST00000585941 HEATR4Q86WZ0 1026 aa13.8□□□□□ -0.2
LIG3-205ENST00000585941 RALGPS2Q86X27 583 aaPredicted RBP13.8□□□□□ -0.2
LIG3-205ENST00000585941 PYDC1Q8WXC3 89 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms