RNA–Protein interactions for RNA: ENST00000581383.1

SMCHD1-205, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 806 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-205ENST00000581383 LINGO4Q6UY18 593 aa4.36□□□□□ -1.71
SMCHD1-205ENST00000581383 NUP54Q7Z3B4 507 aa4.36□□□□□ -1.71
SMCHD1-205ENST00000581383 TLK2Q86UE8 772 aa4.36□□□□□ -1.71
SMCHD1-205ENST00000581383 METTL23Q86XA0 190 aa4.36□□□□□ -1.71
SMCHD1-205ENST00000581383 CIARTQ8N365 385 aaPredicted RBP4.36□□□□□ -1.71
SMCHD1-205ENST00000581383 RFLNBQ8N5W9 214 aa4.36□□□□□ -1.71
SMCHD1-205ENST00000581383 NKAIN3Q8N8D7 197 aa4.36□□□□□ -1.71
SMCHD1-205ENST00000581383 SETD6Q8TBK2 473 aa4.36□□□□□ -1.71
SMCHD1-205ENST00000581383 EXT2Q93063 718 aa4.36□□□□□ -1.71
SMCHD1-205ENST00000581383 ST6GAL2Q96JF0 529 aa4.36□□□□□ -1.71
SMCHD1-205ENST00000581383 SGK494Q96LW2 274 aa4.36□□□□□ -1.71
SMCHD1-205ENST00000581383 MUS81Q96NY9 551 aa4.36□□□□□ -1.71
SMCHD1-205ENST00000581383 MYADMQ96S97 322 aa4.36□□□□□ -1.71
SMCHD1-205ENST00000581383 PSD2Q9BQI7 771 aa4.36□□□□□ -1.71
SMCHD1-205ENST00000581383 TRMT61BQ9BVS5 477 aaKnown RBP4.36□□□□□ -1.71
SMCHD1-205ENST00000581383 S1PR5Q9H228 398 aa4.36□□□□□ -1.71
SMCHD1-205ENST00000581383 ARRDC1-AS1Q9H2J1 176 aa4.36□□□□□ -1.71
SMCHD1-205ENST00000581383 TFB2MQ9H5Q4 396 aaKnown RBP4.36□□□□□ -1.71
SMCHD1-205ENST00000581383 TBC1D7Q9P0N9 293 aa4.36□□□□□ -1.71
SMCHD1-205ENST00000581383 MTUS1Q9ULD2 1270 aa4.36□□□□□ -1.71
SMCHD1-205ENST00000581383 A0A087WYN8 130 aa4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 NR3C1P04150 777 aa4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 F7P08709 466 aaPredicted RBP4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 PDGFRAP16234 1089 aa4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 CD22P20273 847 aa4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 TCEA1P23193 301 aaKnown RBP4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 MARK3P27448 753 aa4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 SLC6A6P31641 620 aa4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 PRKCZQ05513 592 aa4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 PHLDA2Q53GA4 152 aa4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 HECTD3Q5T447 861 aa4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 PRR27Q6MZM9 219 aa4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 GDPD4Q6W3E5 623 aa4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 NFE4Q86UQ8 179 aa4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 PLD3Q8IV08 490 aa4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 TMEM139Q8IV31 216 aa4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 DNAJC22Q8N4W6 341 aa4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 ZNF611Q8N823 705 aa4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 NPEPL1Q8NDH3 523 aa4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 IRGQQ8WZA9 623 aa4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 SCRN2Q96FV2 425 aa4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 WBP1Q96G27 269 aa4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 LRRC3BQ96PB8 259 aa4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 SPAG5Q96R06 1193 aa4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 RTP3Q9BQQ7 232 aa4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 KATNB1Q9BVA0 655 aa4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 FZD8Q9H461 694 aa4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 GRPEL1Q9HAV7 217 aa4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 ZBTB20Q9HC78 741 aaPredicted RBP4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 A4GALTQ9NPC4 353 aa4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 ZFP57Q9NU63 452 aa4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 CHCHD3Q9NX63 227 aaKnown RBP4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 LRWD1Q9UFC0 647 aa4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 KCNG2Q9UJ96 466 aa4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 PCDH11YQ9BZA8 1340 aa4.35□□□□□ -1.71
SMCHD1-205ENST00000581383 ANXA2P2A6NMY6 339 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 AP5Z1O43299 807 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 GNAZP19086 355 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 MNDAP41218 407 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 PRKCIP41743 596 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 LHX1P48742 406 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 CAPZA1P52907 286 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 PDX1P52945 283 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 MAT1AQ00266 395 aaKnown RBP4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 ZNF415Q09FC8 603 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 DMP1Q13316 513 aaPredicted RBP4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 VEZF1Q14119 521 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 TCTE1Q5JU00 501 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 ELFN2Q5R3F8 820 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 ZNF554Q86TJ5 538 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 FAM219AQ8IW50 185 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 ANKRD13CQ8N6S4 541 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 THAP8Q8NA92 274 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 OR2T12Q8NG77 320 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 OR1J1Q8NGS3 322 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 OLIG1Q8TAK6 271 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 CCDC107Q8WV48 283 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 MOB3AQ96BX8 217 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 DHX58Q96C10 678 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 ALG14Q96F25 216 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 THOC1Q96FV9 657 aaKnown RBP4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 EGFL8Q99944 293 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 FERMT1Q9BQL6 677 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 MGME1Q9BQP7 344 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 ADPGKQ9BRR6 497 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 CDH20Q9HBT6 801 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 FRMD4AQ9P2Q2 1039 aaPredicted RBP4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 DAPK2Q9UIK4 370 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 SLC7A7Q9UM01 511 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 TMED3Q9Y3Q3 217 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 SCN5AQ14524 2016 aa4.34□□□□□ -1.71
SMCHD1-205ENST00000581383 TRAV34A0A0B4J273 112 aa4.33□□□□□ -1.72
SMCHD1-205ENST00000581383 DUXAA6NLW8 204 aa4.33□□□□□ -1.72
SMCHD1-205ENST00000581383 CLIC2O15247 247 aa4.33□□□□□ -1.72
SMCHD1-205ENST00000581383 PRKNO60260 465 aaPredicted RBP4.33□□□□□ -1.72
SMCHD1-205ENST00000581383 RNASEH1O60930 286 aaKnown RBP4.33□□□□□ -1.72
SMCHD1-205ENST00000581383 KRT36O76013 467 aa4.33□□□□□ -1.72
SMCHD1-205ENST00000581383 INHBAP08476 426 aa4.33□□□□□ -1.72
SMCHD1-205ENST00000581383 HSPA8P11142 646 aaKnown RBP4.33□□□□□ -1.72
SMCHD1-205ENST00000581383 CRKLP46109 303 aaKnown RBP4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms