RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 BRSK1Q8TDC3 778 aa15.43■□□□□ 0.06
VPS53-218ENST00000575207 TUBGCP2Q9BSJ2 902 aa15.43■□□□□ 0.06
VPS53-218ENST00000575207 PLA2G12AQ9BZM1 189 aa15.43■□□□□ 0.06
VPS53-218ENST00000575207 SLC6A16Q9GZN6 736 aa15.43■□□□□ 0.06
VPS53-218ENST00000575207 RAD18Q9NS91 495 aa15.43■□□□□ 0.06
VPS53-218ENST00000575207 IRAK4Q9NWZ3 460 aa15.43■□□□□ 0.06
VPS53-218ENST00000575207 ACTR10Q9NZ32 417 aa15.43■□□□□ 0.06
VPS53-218ENST00000575207 C3orf18Q9UK00 162 aa15.43■□□□□ 0.06
VPS53-218ENST00000575207 CFAP45Q9UL16 551 aa15.43■□□□□ 0.06
VPS53-218ENST00000575207 PLCL2Q9UPR0 1127 aa15.43■□□□□ 0.06
VPS53-218ENST00000575207 ABCA1O95477 2261 aa15.42■□□□□ 0.06
VPS53-218ENST00000575207 EIF3CLB5ME19 914 aaKnown RBP15.42■□□□□ 0.06
VPS53-218ENST00000575207 CCP110O43303 1012 aa15.42■□□□□ 0.06
VPS53-218ENST00000575207 ICAM2P13598 275 aa15.42■□□□□ 0.06
VPS53-218ENST00000575207 CD46P15529 392 aa15.42■□□□□ 0.06
VPS53-218ENST00000575207 ZFP36L2P47974 494 aaKnown RBP15.42■□□□□ 0.06
VPS53-218ENST00000575207 STX17P56962 302 aa15.42■□□□□ 0.06
VPS53-218ENST00000575207 SLC25A35Q3KQZ1 300 aa15.42■□□□□ 0.06
VPS53-218ENST00000575207 ATL3Q6DD88 541 aa15.42■□□□□ 0.06
VPS53-218ENST00000575207 WDR59Q6PJI9 974 aa15.42■□□□□ 0.06
VPS53-218ENST00000575207 LIX1LQ8IVB5 337 aa15.42■□□□□ 0.06
VPS53-218ENST00000575207 LPCAT1Q8NF37 534 aa15.42■□□□□ 0.06
VPS53-218ENST00000575207 STT3BQ8TCJ2 826 aa15.42■□□□□ 0.06
VPS53-218ENST00000575207 EIF3CQ99613 913 aaKnown RBP15.42■□□□□ 0.06
VPS53-218ENST00000575207 SGPP1Q9BX95 441 aa15.42■□□□□ 0.06
VPS53-218ENST00000575207 IL1RAPL1Q9NZN1 696 aa15.42■□□□□ 0.06
VPS53-218ENST00000575207 DNAJC12Q9UKB3 198 aa15.42■□□□□ 0.06
VPS53-218ENST00000575207 ACSL5Q9ULC5 683 aa15.42■□□□□ 0.06
VPS53-218ENST00000575207 FAM237AA0A1B0GTK4 181 aa15.41■□□□□ 0.06
VPS53-218ENST00000575207 SYT5O00445 386 aa15.41■□□□□ 0.06
VPS53-218ENST00000575207 SMPD2O60906 423 aa15.41■□□□□ 0.06
VPS53-218ENST00000575207 GOSR1O95249 250 aa15.41■□□□□ 0.06
VPS53-218ENST00000575207 GNA14O95837 355 aa15.41■□□□□ 0.06
VPS53-218ENST00000575207 ZGLP1P0C6A0 271 aa15.41■□□□□ 0.06
VPS53-218ENST00000575207 CD96P40200 585 aa15.41■□□□□ 0.06
VPS53-218ENST00000575207 PNOCQ13519 176 aa15.41■□□□□ 0.06
VPS53-218ENST00000575207 OR1C1Q15619 314 aa15.41■□□□□ 0.06
VPS53-218ENST00000575207 QPCTQ16769 361 aa15.41■□□□□ 0.06
VPS53-218ENST00000575207 ALG1LQ6GMV1 187 aa15.41■□□□□ 0.06
VPS53-218ENST00000575207 SPINK14Q6IE38 97 aa15.41■□□□□ 0.06
VPS53-218ENST00000575207 GBP6Q6ZN66 633 aa15.41■□□□□ 0.06
VPS53-218ENST00000575207 ADGRF3Q8IZF5 1079 aa15.41■□□□□ 0.06
VPS53-218ENST00000575207 BEST3Q8N1M1 668 aa15.41■□□□□ 0.06
VPS53-218ENST00000575207 TEX26Q8N6G2 289 aa15.41■□□□□ 0.06
VPS53-218ENST00000575207 NSMCE1Q8WV22 266 aa15.41■□□□□ 0.06
VPS53-218ENST00000575207 TTC25Q96NG3 672 aa15.41■□□□□ 0.06
VPS53-218ENST00000575207 NRTNQ99748 197 aa15.41■□□□□ 0.06
VPS53-218ENST00000575207 OLFM1Q99784 485 aa15.41■□□□□ 0.06
VPS53-218ENST00000575207 POLR1EQ9GZS1 481 aaKnown RBP15.41■□□□□ 0.06
VPS53-218ENST00000575207 TFB2MQ9H5Q4 396 aaKnown RBP15.41■□□□□ 0.06
VPS53-218ENST00000575207 PCDH9Q9HC56 1237 aa15.41■□□□□ 0.06
VPS53-218ENST00000575207 ALG6Q9Y672 507 aa15.41■□□□□ 0.06
VPS53-218ENST00000575207 ANKRD66B4E2M5 251 aa15.4■□□□□ 0.06
VPS53-218ENST00000575207 OR1D4P47884 311 aa15.4■□□□□ 0.06
VPS53-218ENST00000575207 EEF1A2Q05639 463 aaKnown RBP15.4■□□□□ 0.06
VPS53-218ENST00000575207 DMTNQ08495 405 aa15.4■□□□□ 0.06
VPS53-218ENST00000575207 ITKQ08881 620 aa15.4■□□□□ 0.06
VPS53-218ENST00000575207 STIM1Q13586 685 aa15.4■□□□□ 0.06
VPS53-218ENST00000575207 KRT33BQ14525 404 aa15.4■□□□□ 0.06
VPS53-218ENST00000575207 EXOC3L4Q17RC7 722 aa15.4■□□□□ 0.06
VPS53-218ENST00000575207 ACAD10Q6JQN1 1059 aa15.4■□□□□ 0.06
VPS53-218ENST00000575207 TRIM73Q86UV7 250 aa15.4■□□□□ 0.06
VPS53-218ENST00000575207 HOOK3Q86VS8 718 aa15.4■□□□□ 0.06
VPS53-218ENST00000575207 RASGEF1AQ8N9B8 481 aa15.4■□□□□ 0.06
VPS53-218ENST00000575207 TMEM125Q96AQ2 219 aa15.4■□□□□ 0.06
VPS53-218ENST00000575207 MIEF2Q96C03 454 aa15.4■□□□□ 0.06
VPS53-218ENST00000575207 DHTKD1Q96HY7 919 aaPredicted RBP15.4■□□□□ 0.06
VPS53-218ENST00000575207 C11orf70Q9BRQ4 267 aa15.4■□□□□ 0.06
VPS53-218ENST00000575207 XPO4Q9C0E2 1151 aaKnown RBP15.4■□□□□ 0.06
VPS53-218ENST00000575207 DHX35Q9H5Z1 703 aaKnown RBP15.4■□□□□ 0.06
VPS53-218ENST00000575207 NT5MQ9NPB1 228 aa15.4■□□□□ 0.06
VPS53-218ENST00000575207 AP4E1Q9UPM8 1137 aa15.4■□□□□ 0.06
VPS53-218ENST00000575207 ZNF281Q9Y2X9 895 aa15.4■□□□□ 0.06
VPS53-218ENST00000575207 HEBP2Q9Y5Z4 205 aa15.4■□□□□ 0.06
VPS53-218ENST00000575207 NBEAL2Q6ZNJ1 2754 aa15.39■□□□□ 0.05
VPS53-218ENST00000575207 CNOT4O95628 575 aaKnown RBP15.39■□□□□ 0.05
VPS53-218ENST00000575207 NEFLP07196 543 aa15.39■□□□□ 0.05
VPS53-218ENST00000575207 SP1P08047 785 aa15.39■□□□□ 0.05
VPS53-218ENST00000575207 MMEP08473 750 aa15.39■□□□□ 0.05
VPS53-218ENST00000575207 CA4P22748 312 aa15.39■□□□□ 0.05
VPS53-218ENST00000575207 CES1P23141 567 aa15.39■□□□□ 0.05
VPS53-218ENST00000575207 CXCR2P25025 360 aa15.39■□□□□ 0.05
VPS53-218ENST00000575207 PON1P27169 355 aa15.39■□□□□ 0.05
VPS53-218ENST00000575207 ZNF143P52747 638 aaPredicted RBP15.39■□□□□ 0.05
VPS53-218ENST00000575207 CDH6P55285 790 aa15.39■□□□□ 0.05
VPS53-218ENST00000575207 CA9Q16790 459 aa15.39■□□□□ 0.05
VPS53-218ENST00000575207 ACER2Q5QJU3 275 aa15.39■□□□□ 0.05
VPS53-218ENST00000575207 YOD1Q5VVQ6 348 aaPredicted RBP15.39■□□□□ 0.05
VPS53-218ENST00000575207 BHLHB9Q6PI77 547 aa15.39■□□□□ 0.05
VPS53-218ENST00000575207 TMC3Q7Z5M5 1100 aa15.39■□□□□ 0.05
VPS53-218ENST00000575207 NOP9Q86U38 636 aaKnown RBP15.39■□□□□ 0.05
VPS53-218ENST00000575207 AMIGO1Q86WK6 493 aa15.39■□□□□ 0.05
VPS53-218ENST00000575207 OR10Q1Q8NGQ4 319 aa15.39■□□□□ 0.05
VPS53-218ENST00000575207 CCDC34Q96HJ3 373 aa15.39■□□□□ 0.05
VPS53-218ENST00000575207 RMDN2Q96LZ7 410 aa15.39■□□□□ 0.05
VPS53-218ENST00000575207 GSDMAQ96QA5 445 aa15.39■□□□□ 0.05
VPS53-218ENST00000575207 UTP23Q9BRU9 249 aaKnown RBP15.39■□□□□ 0.05
VPS53-218ENST00000575207 ENAMQ9NRM1 1142 aa15.39■□□□□ 0.05
VPS53-218ENST00000575207 CUTCQ9NTM9 273 aa15.39■□□□□ 0.05
VPS53-218ENST00000575207 EURLQ9NYK6 297 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms