RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 ACRBPQ8NEB7 543 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 OR13J1Q8NGT2 312 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 SLC35B2Q8TB61 432 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 STYXQ8WUJ0 223 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 HEXDCQ8WVB3 486 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 CLIP3Q96DZ5 547 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 C19orf60Q96EN9 201 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 DCUN1D1Q96GG9 259 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 GBP5Q96PP8 586 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 RANBP9Q96S59 729 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 MFRPQ9BY79 579 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 CHRNA10Q9GZZ6 450 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 SPRTNQ9H040 489 aaPredicted RBP6.49□□□□□ -1.37
VPS53-213ENST00000572334 MVB12BQ9H7P6 319 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 ZBTB20Q9HC78 741 aaPredicted RBP6.49□□□□□ -1.37
VPS53-213ENST00000572334 CDYLQ9Y232 598 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.49□□□□□ -1.37
VPS53-213ENST00000572334 ZNF451Q9Y4E5 1061 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 PCDHGB7Q9Y5F8 929 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 LRBAP50851 2863 aa6.49□□□□□ -1.37
VPS53-213ENST00000572334 MACROD2A1Z1Q3 448 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 CCDC78A2IDD5 438 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 CCDC162PA2VCL2 907 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 WIPF3A6NGB9 483 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 A6NL46 340 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 C2orf74A8MZ97 194 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 CFAP99D6REC4 459 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 E7EQ34 232 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 ZSCAN12O43309 604 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 KRT86O43790 486 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 OR1I1O60431 355 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 VPS4BO75351 444 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 AP2A2O94973 939 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 AP2A1O95782 977 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 CHRM5P08912 532 aaPredicted RBP6.48□□□□□ -1.37
VPS53-213ENST00000572334 NEFHP12036 1026 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 CYP2A7P20853 494 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 GRIA1P42261 906 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 RWDD2BP57060 319 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 CACNG1Q06432 222 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 RAPSNQ13702 412 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 KRT33BQ14525 404 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 PRPSAP1Q14558 356 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 SEMA3AQ14563 771 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 ITIH4Q14624 930 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 PARP6Q2NL67 630 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 EIF2S3LQ2VIR3 472 aaKnown RBP6.48□□□□□ -1.37
VPS53-213ENST00000572334 CCDC38Q502W7 563 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 ZRANB3Q5FWF4 1079 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 FHL5Q5TD97 284 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 RHBDD2Q6NTF9 364 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 PACS1Q6VY07 963 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 MED25Q71SY5 747 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 ZNF534Q76KX8 674 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 PPP1R32Q7Z5V6 425 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 MRGPREQ86SM8 312 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 VRK3Q8IV63 474 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 C19orf47Q8N9M1 422 aaKnown RBP6.48□□□□□ -1.37
VPS53-213ENST00000572334 TMEM102Q8N9M5 508 aaPredicted RBP6.48□□□□□ -1.37
VPS53-213ENST00000572334 FAM71DQ8N9W8 422 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 LINC01555Q8NAE3 123 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 OR5K2Q8NHB8 316 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 LKAAEAR1Q8TD35 194 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 ZNF592Q92610 1267 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 PNPLA2Q96AD5 504 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 TCTN2Q96GX1 697 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 ZNF778Q96MU6 729 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 PANX2Q96RD6 677 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 BARD1Q99728 777 aaKnown RBP6.48□□□□□ -1.37
VPS53-213ENST00000572334 ZNF552Q9H707 407 aaPredicted RBP6.48□□□□□ -1.37
VPS53-213ENST00000572334 FANCEQ9HB96 536 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 GPR83Q9NYM4 423 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 SMARCAL1Q9NZC9 954 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 DHCR7Q9UBM7 475 aaKnown RBP6.48□□□□□ -1.37
VPS53-213ENST00000572334 PLEKHB1Q9UF11 243 aaPredicted RBP6.48□□□□□ -1.37
VPS53-213ENST00000572334 SLC2A6Q9UGQ3 507 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 SERTAD3Q9UJW9 196 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 PLAGL1Q9UM63 463 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 VPS4AQ9UN37 437 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 PACSIN2Q9UNF0 486 aaPredicted RBP6.48□□□□□ -1.37
VPS53-213ENST00000572334 NTNG1Q9Y2I2 539 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 RRP15Q9Y3B9 282 aaKnown RBP6.48□□□□□ -1.37
VPS53-213ENST00000572334 ABCA12Q86UK0 2595 aa6.48□□□□□ -1.37
VPS53-213ENST00000572334 SCN3AQ9NY46 2000 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 A0A087WUV0 522 aaPredicted RBP6.47□□□□□ -1.37
VPS53-213ENST00000572334 A0A0J9YY10 115 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 IFRD1O00458 451 aaPredicted RBP6.47□□□□□ -1.37
VPS53-213ENST00000572334 LIN7AO14910 233 aaPredicted RBP6.47□□□□□ -1.37
VPS53-213ENST00000572334 PRICKLE3O43900 615 aaPredicted RBP6.47□□□□□ -1.37
VPS53-213ENST00000572334 DPM1O60762 260 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 GPC4O75487 556 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 OR2B3O76000 313 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 TJP3O95049 919 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 AGFG2O95081 481 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 MED26O95402 600 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 CBX6O95503 412 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 CLDN1O95832 211 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 ONECUT2O95948 504 aa6.47□□□□□ -1.37
VPS53-213ENST00000572334 GOT2P00505 430 aaKnown RBP6.47□□□□□ -1.37
VPS53-213ENST00000572334 GSTM1P09488 218 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms