RNA–Protein interactions for RNA: ENST00000566843.1

COMMD4-215, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 2,284 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-215ENST00000566843 CEP68Q76N32 757 aa15.34■□□□□ 0.05
COMMD4-215ENST00000566843 TSPYL5Q86VY4 417 aaPredicted RBP15.34■□□□□ 0.05
COMMD4-215ENST00000566843 Q8N9G6 341 aaPredicted RBP15.34■□□□□ 0.05
COMMD4-215ENST00000566843 OR10T2Q8NGX3 314 aa15.34■□□□□ 0.05
COMMD4-215ENST00000566843 GTF3C2Q8WUA4 911 aaPredicted RBP15.34■□□□□ 0.05
COMMD4-215ENST00000566843 ITPAQ9BY32 194 aa15.34■□□□□ 0.05
COMMD4-215ENST00000566843 CLMPQ9H6B4 373 aa15.34■□□□□ 0.05
COMMD4-215ENST00000566843 ASIC5Q9NY37 505 aa15.34■□□□□ 0.05
COMMD4-215ENST00000566843 VPS9D1Q9Y2B5 631 aa15.34■□□□□ 0.05
COMMD4-215ENST00000566843 SPO11Q9Y5K1 396 aa15.34■□□□□ 0.05
COMMD4-215ENST00000566843 TNPO3Q9Y5L0 923 aaKnown RBP15.34■□□□□ 0.05
COMMD4-215ENST00000566843 MANSC4A6NHS7 340 aaPredicted RBP15.34■□□□□ 0.05
COMMD4-215ENST00000566843 TMEM88BA6NKF7 163 aa15.34■□□□□ 0.05
COMMD4-215ENST00000566843 NIPSNAP2O75323 286 aa15.34■□□□□ 0.05
COMMD4-215ENST00000566843 SEC22BO75396 215 aa15.34■□□□□ 0.05
COMMD4-215ENST00000566843 LCKP06239 509 aa15.34■□□□□ 0.05
COMMD4-215ENST00000566843 PGRP06401 933 aa15.34■□□□□ 0.05
COMMD4-215ENST00000566843 SERPINF2P08697 491 aa15.34■□□□□ 0.05
COMMD4-215ENST00000566843 PPP3CCP48454 512 aa15.34■□□□□ 0.05
COMMD4-215ENST00000566843 ZNF45Q02386 682 aa15.34■□□□□ 0.05
COMMD4-215ENST00000566843 PRKCDQ05655 676 aa15.34■□□□□ 0.05
COMMD4-215ENST00000566843 PTGR1Q14914 329 aa15.34■□□□□ 0.05
COMMD4-215ENST00000566843 SPANXN4Q5MJ08 99 aa15.34■□□□□ 0.05
COMMD4-215ENST00000566843 ZDHHC21Q8IVQ6 265 aa15.34■□□□□ 0.05
COMMD4-215ENST00000566843 PHACTR4Q8IZ21 702 aa15.34■□□□□ 0.05
COMMD4-215ENST00000566843 CLIP4Q8N3C7 705 aa15.34■□□□□ 0.05
COMMD4-215ENST00000566843 FCGR1BQ92637 280 aa15.34■□□□□ 0.05
COMMD4-215ENST00000566843 TP53INP1Q96A56 240 aa15.34■□□□□ 0.05
COMMD4-215ENST00000566843 HBEGFQ99075 208 aa15.34■□□□□ 0.05
COMMD4-215ENST00000566843 PITX2Q99697 317 aa15.34■□□□□ 0.05
COMMD4-215ENST00000566843 PAAF1Q9BRP4 392 aa15.34■□□□□ 0.05
COMMD4-215ENST00000566843 DPY30Q9C005 99 aa15.34■□□□□ 0.05
COMMD4-215ENST00000566843 NEK6Q9HC98 313 aa15.34■□□□□ 0.05
COMMD4-215ENST00000566843 TM9SF3Q9HD45 589 aa15.34■□□□□ 0.05
COMMD4-215ENST00000566843 PCNTO95613 3336 aa15.34■□□□□ 0.05
COMMD4-215ENST00000566843 ANKRD34BA5PLL1 514 aa15.33■□□□□ 0.05
COMMD4-215ENST00000566843 PRAMEF11O60813 436 aa15.33■□□□□ 0.05
COMMD4-215ENST00000566843 CNPP09543 421 aaKnown RBP15.33■□□□□ 0.05
COMMD4-215ENST00000566843 HOXA9P31269 272 aa15.33■□□□□ 0.05
COMMD4-215ENST00000566843 KRT20P35900 424 aa15.33■□□□□ 0.05
COMMD4-215ENST00000566843 NKX2-5P52952 324 aaPredicted RBP15.33■□□□□ 0.05
COMMD4-215ENST00000566843 RPL38P63173 70 aaKnown RBP15.33■□□□□ 0.05
COMMD4-215ENST00000566843 KRR1Q13601 381 aaKnown RBP15.33■□□□□ 0.05
COMMD4-215ENST00000566843 GTF2H2Q13888 395 aa15.33■□□□□ 0.05
COMMD4-215ENST00000566843 MFSD10Q14728 455 aa15.33■□□□□ 0.05
COMMD4-215ENST00000566843 CARTPTQ16568 116 aa15.33■□□□□ 0.05
COMMD4-215ENST00000566843 SMN1Q16637 294 aaKnown RBP15.33■□□□□ 0.05
COMMD4-215ENST00000566843 PARP15Q460N3 678 aa15.33■□□□□ 0.05
COMMD4-215ENST00000566843 GTDC1Q4AE62 458 aa15.33■□□□□ 0.05
COMMD4-215ENST00000566843 LRIF1Q5T3J3 769 aa15.33■□□□□ 0.05
COMMD4-215ENST00000566843 DESI1Q6ICB0 168 aa15.33■□□□□ 0.05
COMMD4-215ENST00000566843 GTF2H2CQ6P1K8 395 aa15.33■□□□□ 0.05
COMMD4-215ENST00000566843 GCNT7Q6ZNI0 430 aa15.33■□□□□ 0.05
COMMD4-215ENST00000566843 FAM83FQ8NEG4 500 aaPredicted RBP15.33■□□□□ 0.05
COMMD4-215ENST00000566843 OR4K2Q8NGD2 314 aa15.33■□□□□ 0.05
COMMD4-215ENST00000566843 LILRB4Q8NHJ6 448 aa15.33■□□□□ 0.05
COMMD4-215ENST00000566843 PROX1Q92786 737 aa15.33■□□□□ 0.05
COMMD4-215ENST00000566843 IGSF8Q969P0 613 aa15.33■□□□□ 0.05
COMMD4-215ENST00000566843 IL37Q9NZH6 218 aa15.33■□□□□ 0.05
COMMD4-215ENST00000566843 TRIP12Q14669 1992 aaPredicted RBP15.33■□□□□ 0.05
COMMD4-215ENST00000566843 CASTOR2A6NHX0 329 aa15.33■□□□□ 0.04
COMMD4-215ENST00000566843 DRGXA6NNA5 263 aa15.33■□□□□ 0.04
COMMD4-215ENST00000566843 HAT1O14929 419 aa15.33■□□□□ 0.04
COMMD4-215ENST00000566843 ERN1O75460 977 aaKnown RBP15.33■□□□□ 0.04
COMMD4-215ENST00000566843 OTCP00480 354 aa15.33■□□□□ 0.04
COMMD4-215ENST00000566843 CYP4B1P13584 511 aa15.33■□□□□ 0.04
COMMD4-215ENST00000566843 HOXB9P17482 250 aaPredicted RBP15.33■□□□□ 0.04
COMMD4-215ENST00000566843 CLCN4P51793 760 aa15.33■□□□□ 0.04
COMMD4-215ENST00000566843 TBX4P57082 545 aa15.33■□□□□ 0.04
COMMD4-215ENST00000566843 TAF1CQ15572 869 aaPredicted RBP15.33■□□□□ 0.04
COMMD4-215ENST00000566843 TAF1AQ15573 450 aaPredicted RBP15.33■□□□□ 0.04
COMMD4-215ENST00000566843 OR2T5Q6IEZ7 315 aa15.33■□□□□ 0.04
COMMD4-215ENST00000566843 TTC29Q8NA56 475 aaPredicted RBP15.33■□□□□ 0.04
COMMD4-215ENST00000566843 OR2T29Q8NH02 315 aa15.33■□□□□ 0.04
COMMD4-215ENST00000566843 ATL1Q8WXF7 558 aa15.33■□□□□ 0.04
COMMD4-215ENST00000566843 FAM120BQ96EK7 910 aaKnown RBP15.33■□□□□ 0.04
COMMD4-215ENST00000566843 SLC6A13Q9NSD5 602 aa15.33■□□□□ 0.04
COMMD4-215ENST00000566843 MAN2B2Q9Y2E5 1009 aa15.33■□□□□ 0.04
COMMD4-215ENST00000566843 MYO16Q9Y6X6 1858 aa15.33■□□□□ 0.04
COMMD4-215ENST00000566843 SLC28A1O00337 649 aa15.32■□□□□ 0.04
COMMD4-215ENST00000566843 RGS14O43566 566 aa15.32■□□□□ 0.04
COMMD4-215ENST00000566843 RAMP2O60895 175 aa15.32■□□□□ 0.04
COMMD4-215ENST00000566843 WBP4O75554 376 aaKnown RBP15.32■□□□□ 0.04
COMMD4-215ENST00000566843 FKBP9O95302 570 aa15.32■□□□□ 0.04
COMMD4-215ENST00000566843 LIPAP38571 399 aa15.32■□□□□ 0.04
COMMD4-215ENST00000566843 CLK1P49759 484 aaKnown RBP15.32■□□□□ 0.04
COMMD4-215ENST00000566843 SEPHS1P49903 392 aa15.32■□□□□ 0.04
COMMD4-215ENST00000566843 CDKN1CP49918 316 aaPredicted RBP15.32■□□□□ 0.04
COMMD4-215ENST00000566843 CSNK2BP67870 215 aa15.32■□□□□ 0.04
COMMD4-215ENST00000566843 ZNF235Q14590 738 aa15.32■□□□□ 0.04
COMMD4-215ENST00000566843 C18orf21Q32NC0 220 aaPredicted RBP15.32■□□□□ 0.04
COMMD4-215ENST00000566843 PROX2Q3B8N5 592 aa15.32■□□□□ 0.04
COMMD4-215ENST00000566843 CD300LGQ6UXG3 332 aa15.32■□□□□ 0.04
COMMD4-215ENST00000566843 USP43Q70EL4 1123 aa15.32■□□□□ 0.04
COMMD4-215ENST00000566843 IFNL1Q8IU54 200 aa15.32■□□□□ 0.04
COMMD4-215ENST00000566843 CCDC71Q8IV32 467 aaPredicted RBP15.32■□□□□ 0.04
COMMD4-215ENST00000566843 SLC22A15Q8IZD6 547 aa15.32■□□□□ 0.04
COMMD4-215ENST00000566843 C10orf111Q8N326 155 aa15.32■□□□□ 0.04
COMMD4-215ENST00000566843 METTL4Q8N3J2 472 aa15.32■□□□□ 0.04
COMMD4-215ENST00000566843 KCNJ9Q92806 393 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms