RNA–Protein interactions for RNA: ENST00000565442.1

CHD9-215, Transcript of chromodomain helicase DNA binding protein 9, human

TSL 2

Gene CHD9, Length 703 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD9-215	ENST00000565442	TFCP2	Q12800	502 aa		4.14	□□□□□ -1.75
CHD9-215	ENST00000565442	SYT14P1	Q58G82	188 aa		4.14	□□□□□ -1.75
CHD9-215	ENST00000565442	TRAT1	Q6PIZ9	186 aa		4.14	□□□□□ -1.75
CHD9-215	ENST00000565442	GDPD4	Q6W3E5	623 aa		4.14	□□□□□ -1.75
CHD9-215	ENST00000565442	GALNTL5	Q7Z4T8	443 aa		4.14	□□□□□ -1.75
CHD9-215	ENST00000565442	DNAJB7	Q7Z6W7	309 aa	Predicted RBP	4.14	□□□□□ -1.75
CHD9-215	ENST00000565442	DNAJC22	Q8N4W6	341 aa		4.14	□□□□□ -1.75
CHD9-215	ENST00000565442	IQUB	Q8NA54	791 aa		4.14	□□□□□ -1.75
CHD9-215	ENST00000565442	OR2T12	Q8NG77	320 aa		4.14	□□□□□ -1.75
CHD9-215	ENST00000565442	OLIG1	Q8TAK6	271 aa		4.14	□□□□□ -1.75
CHD9-215	ENST00000565442	IRGQ	Q8WZA9	623 aa		4.14	□□□□□ -1.75
CHD9-215	ENST00000565442	SCRN2	Q96FV2	425 aa		4.14	□□□□□ -1.75
CHD9-215	ENST00000565442	ZNF354B	Q96LW1	612 aa		4.14	□□□□□ -1.75
CHD9-215	ENST00000565442	MUS81	Q96NY9	551 aa		4.14	□□□□□ -1.75
CHD9-215	ENST00000565442	FEV	Q99581	238 aa		4.14	□□□□□ -1.75
CHD9-215	ENST00000565442	CPNE1	Q99829	537 aa		4.14	□□□□□ -1.75
CHD9-215	ENST00000565442	RTP3	Q9BQQ7	232 aa		4.14	□□□□□ -1.75
CHD9-215	ENST00000565442	A4GALT	Q9NPC4	353 aa		4.14	□□□□□ -1.75
CHD9-215	ENST00000565442	LRWD1	Q9UFC0	647 aa		4.14	□□□□□ -1.75
CHD9-215	ENST00000565442	SLC7A7	Q9UM01	511 aa		4.14	□□□□□ -1.75
CHD9-215	ENST00000565442	PCDH11Y	Q9BZA8	1340 aa		4.14	□□□□□ -1.75
CHD9-215	ENST00000565442	ARHGEF37	A1IGU5	675 aa		4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	CLDN4	O14493	209 aa		4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	SCG2	P13521	617 aa		4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	IFNAR1	P17181	557 aa		4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	GNAZ	P19086	355 aa		4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	CD22	P20273	847 aa		4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	SLC6A6	P31641	620 aa		4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	ASCL1	P50553	236 aa		4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	PDX1	P52945	283 aa		4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	LIMK1	P53667	647 aa		4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	PRKCZ	Q05513	592 aa		4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	ZNF415	Q09FC8	603 aa		4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	DMP1	Q13316	513 aa	Predicted RBP	4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	ZNF273	Q14593	569 aa		4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	KRT71	Q3SY84	523 aa		4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	OTUD3	Q5T2D3	398 aa	Predicted RBP	4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	PRR27	Q6MZM9	219 aa		4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	CAVIN1	Q6NZI2	390 aa	Known RBP	4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	TLK2	Q86UE8	772 aa		4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	PLD3	Q8IV08	490 aa		4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	TMEM139	Q8IV31	216 aa		4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	MAML2	Q8IZL2	1156 aa	Predicted RBP	4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	ANKRD13C	Q8N6S4	541 aa		4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	NPEPL1	Q8NDH3	523 aa		4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	OR1J1	Q8NGS3	322 aa		4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	EXT2	Q93063	718 aa		4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	MOB3A	Q96BX8	217 aa		4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	THOC1	Q96FV9	657 aa	Known RBP	4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	FZD8	Q9H461	694 aa		4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	ZBTB20	Q9HC78	741 aa	Predicted RBP	4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	CHCHD3	Q9NX63	227 aa	Known RBP	4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	TBC1D7	Q9P0N9	293 aa		4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	DAPK2	Q9UIK4	370 aa		4.13	□□□□□ -1.75
CHD9-215	ENST00000565442	AP5Z1	O43299	807 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	PRKN	O60260	465 aa	Predicted RBP	4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	HSPA8	P11142	646 aa	Known RBP	4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	PDGFRA	P16234	1089 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	GP5	P40197	560 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	MNDA	P41218	407 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	PRKCI	P41743	596 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	LHX1	P48742	406 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	DLX5	P56178	289 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	MAT1A	Q00266	395 aa	Known RBP	4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	POU5F1	Q01860	360 aa	Known RBP	4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	RBBP5	Q15291	538 aa	Known RBP	4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	ZRSR1	Q15695	479 aa	Known RBP	4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	CA9	Q16790	459 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	ACCSL	Q4AC99	568 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	TCTE1	Q5JU00	501 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	DCAF10	Q5QP82	559 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	ELFN2	Q5R3F8	820 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	DCLRE1A	Q6PJP8	1040 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	ZNF554	Q86TJ5	538 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	METTL23	Q86XA0	190 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	ZNF611	Q8N823	705 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	NKAIN3	Q8N8D7	197 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	THAP8	Q8NA92	274 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	SETD6	Q8TBK2	473 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	CCDC107	Q8WV48	283 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	DHX58	Q96C10	678 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	SLC47A1	Q96FL8	570 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	LRRC3B	Q96PB8	259 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	SPAG5	Q96R06	1193 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	EPYC	Q99645	322 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	MGME1	Q9BQP7	344 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	RHNO1	Q9BSD3	238 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	KATNB1	Q9BVA0	655 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	BICC1	Q9H694	974 aa	Known RBP	4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	GRPEL1	Q9HAV7	217 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	GKN1	Q9NS71	199 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	FAM118A	Q9NWS6	357 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	ICAM5	Q9UMF0	924 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	TMED3	Q9Y3Q3	217 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	FLT1	P17948	1338 aa		4.12	□□□□□ -1.75
CHD9-215	ENST00000565442	SCN5A	Q14524	2016 aa		4.11	□□□□□ -1.75
CHD9-215	ENST00000565442	DUXA	A6NLW8	204 aa		4.11	□□□□□ -1.75
CHD9-215	ENST00000565442	BMPR1B	O00238	502 aa		4.11	□□□□□ -1.75
CHD9-215	ENST00000565442	PLOD2	O00469	737 aa		4.11	□□□□□ -1.75
CHD9-215	ENST00000565442	FGF17	O60258	216 aa		4.11	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms