RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 LCP2Q13094 533 aa5□□□□□ -1.61
VPS35-205ENST00000563984 SLC13A2Q13183 592 aa5□□□□□ -1.61
VPS35-205ENST00000563984 STX5Q13190 355 aa5□□□□□ -1.61
VPS35-205ENST00000563984 CTBP1Q13363 440 aa5□□□□□ -1.61
VPS35-205ENST00000563984 TRA2AQ13595 282 aaKnown RBP eCLIP5□□□□□ -1.61
VPS35-205ENST00000563984 TSTA3Q13630 321 aaPredicted RBP5□□□□□ -1.61
VPS35-205ENST00000563984 RAB32Q13637 225 aa5□□□□□ -1.61
VPS35-205ENST00000563984 FLOT2Q14254 428 aa5□□□□□ -1.61
VPS35-205ENST00000563984 NPTX1Q15818 432 aa5□□□□□ -1.61
VPS35-205ENST00000563984 CAMK4Q16566 473 aa5□□□□□ -1.61
VPS35-205ENST00000563984 TIGD6Q17RP2 521 aa5□□□□□ -1.61
VPS35-205ENST00000563984 TYSND1Q2T9J0 566 aa5□□□□□ -1.61
VPS35-205ENST00000563984 TMEM119Q4V9L6 283 aa5□□□□□ -1.61
VPS35-205ENST00000563984 PAGE2BQ5JRK9 111 aa5□□□□□ -1.61
VPS35-205ENST00000563984 TEX30Q5JUR7 227 aa5□□□□□ -1.61
VPS35-205ENST00000563984 MARCH8Q5T0T0 291 aa5□□□□□ -1.61
VPS35-205ENST00000563984 RIPPLY2Q5TAB7 128 aa5□□□□□ -1.61
VPS35-205ENST00000563984 PLA2G4FQ68DD2 849 aa5□□□□□ -1.61
VPS35-205ENST00000563984 DUS1LQ6P1R4 473 aaKnown RBP5□□□□□ -1.61
VPS35-205ENST00000563984 ZNF530Q6P9A1 599 aaPredicted RBP5□□□□□ -1.61
VPS35-205ENST00000563984 DENND5BQ6ZUT9 1274 aa5□□□□□ -1.61
VPS35-205ENST00000563984 CHST3Q7LGC8 479 aa5□□□□□ -1.61
VPS35-205ENST00000563984 OTOAQ7RTW8 1153 aa5□□□□□ -1.61
VPS35-205ENST00000563984 VASH2Q86V25 355 aa5□□□□□ -1.61
VPS35-205ENST00000563984 MOGAT3Q86VF5 341 aa5□□□□□ -1.61
VPS35-205ENST00000563984 CCDC28AQ8IWP9 274 aa5□□□□□ -1.61
VPS35-205ENST00000563984 C17orf53Q8N3J3 647 aaPredicted RBP5□□□□□ -1.61
VPS35-205ENST00000563984 RASGEF1CQ8N431 466 aa5□□□□□ -1.61
VPS35-205ENST00000563984 FBXL16Q8N461 479 aa5□□□□□ -1.61
VPS35-205ENST00000563984 SREK1IP1Q8N9Q2 155 aaPredicted RBP5□□□□□ -1.61
VPS35-205ENST00000563984 BHLHE23Q8NDY6 225 aa5□□□□□ -1.61
VPS35-205ENST00000563984 OR8J2Q8NGG1 315 aa5□□□□□ -1.61
VPS35-205ENST00000563984 LHFPL5Q8TAF8 219 aa5□□□□□ -1.61
VPS35-205ENST00000563984 UBA3Q8TBC4 463 aa5□□□□□ -1.61
VPS35-205ENST00000563984 MUL1Q969V5 352 aa5□□□□□ -1.61
VPS35-205ENST00000563984 ARHGEF26Q96DR7 871 aa5□□□□□ -1.61
VPS35-205ENST00000563984 ALG14Q96F25 216 aa5□□□□□ -1.61
VPS35-205ENST00000563984 B3GALT6Q96L58 329 aa5□□□□□ -1.61
VPS35-205ENST00000563984 PPP1R36Q96LQ0 422 aa5□□□□□ -1.61
VPS35-205ENST00000563984 ZNF558Q96NG5 402 aa5□□□□□ -1.61
VPS35-205ENST00000563984 CTRCQ99895 268 aa5□□□□□ -1.61
VPS35-205ENST00000563984 CNPY3Q9BT09 278 aa5□□□□□ -1.61
VPS35-205ENST00000563984 CHID1Q9BWS9 393 aa5□□□□□ -1.61
VPS35-205ENST00000563984 HEMGNQ9BXL5 484 aa5□□□□□ -1.61
VPS35-205ENST00000563984 TWSG1Q9GZX9 223 aa5□□□□□ -1.61
VPS35-205ENST00000563984 SLC22A4Q9H015 551 aa5□□□□□ -1.61
VPS35-205ENST00000563984 METTL8Q9H825 291 aaKnown RBP5□□□□□ -1.61
VPS35-205ENST00000563984 SAMSN1Q9NSI8 373 aaKnown RBP5□□□□□ -1.61
VPS35-205ENST00000563984 DLL3Q9NYJ7 618 aa5□□□□□ -1.61
VPS35-205ENST00000563984 SELENONQ9NZV5 590 aa5□□□□□ -1.61
VPS35-205ENST00000563984 CDH9Q9ULB4 789 aa5□□□□□ -1.61
VPS35-205ENST00000563984 VPS4AQ9UN37 437 aa5□□□□□ -1.61
VPS35-205ENST00000563984 PCDHA12Q9UN75 941 aa5□□□□□ -1.61
VPS35-205ENST00000563984 CORO2BQ9UQ03 480 aa5□□□□□ -1.61
VPS35-205ENST00000563984 LIPT1Q9Y234 373 aa5□□□□□ -1.61
VPS35-205ENST00000563984 HBS1LQ9Y450 684 aaKnown RBP5□□□□□ -1.61
VPS35-205ENST00000563984 V9GYQ6 96 aa5□□□□□ -1.61
VPS35-205ENST00000563984 FAM205AQ6ZU69 1335 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 TRAV34A0A0B4J273 112 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 WIPF3A6NGB9 483 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 MANSC4A6NHS7 340 aaPredicted RBP4.99□□□□□ -1.61
VPS35-205ENST00000563984 ZNF716A6NP11 495 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 AGAP14A8MT82 685 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 H7C0C1 242 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 ACKR2O00590 384 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 FBP2O00757 339 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 SMAD9O15198 467 aaKnown RBP4.99□□□□□ -1.61
VPS35-205ENST00000563984 SLC22A1O15245 554 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 EIF3HO15372 352 aaKnown RBP eCLIP4.99□□□□□ -1.61
VPS35-205ENST00000563984 CNOT3O75175 753 aaKnown RBP4.99□□□□□ -1.61
VPS35-205ENST00000563984 AHSA1O95433 338 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 METTL18O95568 372 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 SNAP29O95721 258 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 ITGA2BP08514 1039 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 CNPP09543 421 aaKnown RBP4.99□□□□□ -1.61
VPS35-205ENST00000563984 ZNF735P0CB33 412 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 YWHAQP27348 245 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 RPA1P27694 616 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 PSMA5P28066 241 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 GNA11P29992 359 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 CHRNA3P32297 505 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 HSPA9P38646 679 aaKnown RBP4.99□□□□□ -1.61
VPS35-205ENST00000563984 PTGER3P43115 390 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 CLCNKBP51801 687 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 DGKEP52429 567 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 PEX3P56589 373 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 GNG2P59768 71 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 SELENOVP59797 346 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 ACTR3P61158 418 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 SKP1P63208 163 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 PMP22Q01453 160 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 UBE3AQ05086 875 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 RAD51Q06609 339 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 STX3Q13277 289 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 MAMLD1Q13495 774 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 NAB1Q13506 487 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 UAP1Q16222 522 aaPredicted RBP4.99□□□□□ -1.61
VPS35-205ENST00000563984 DUSP28Q4G0W2 176 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 NKAIN1Q4KMZ8 207 aa4.99□□□□□ -1.61
VPS35-205ENST00000563984 ZNF484Q5JVG2 852 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms