RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 TRIM31Q9BZY9 425 aa12.97□□□□□ -0.33
CLK3-213ENST00000563842 FBXO6Q9NRD1 293 aaPredicted RBP12.97□□□□□ -0.33
CLK3-213ENST00000563842 IL1RAPL1Q9NZN1 696 aa12.97□□□□□ -0.33
CLK3-213ENST00000563842 SLC9B1P1A6NJY1 282 aa12.96□□□□□ -0.33
CLK3-213ENST00000563842 ISM1B1AKI9 464 aa12.96□□□□□ -0.33
CLK3-213ENST00000563842 EFSO43281 561 aa12.96□□□□□ -0.33
CLK3-213ENST00000563842 KIAA0754O94854 1291 aa12.96□□□□□ -0.33
CLK3-213ENST00000563842 DLGAP3O95886 979 aa12.96□□□□□ -0.33
CLK3-213ENST00000563842 TUBB4AP04350 444 aa12.96□□□□□ -0.33
CLK3-213ENST00000563842 EBLN1P0CF75 366 aa12.96□□□□□ -0.33
CLK3-213ENST00000563842 PKLRP30613 574 aa12.96□□□□□ -0.33
CLK3-213ENST00000563842 ELK3P41970 407 aa12.96□□□□□ -0.33
CLK3-213ENST00000563842 CKAP4Q07065 602 aaKnown RBP12.96□□□□□ -0.33
CLK3-213ENST00000563842 GBX1Q14549 363 aa12.96□□□□□ -0.33
CLK3-213ENST00000563842 SLC5A12Q1EHB4 618 aa12.96□□□□□ -0.33
CLK3-213ENST00000563842 C6orf15Q6UXA7 325 aaPredicted RBP12.96□□□□□ -0.33
CLK3-213ENST00000563842 KIAA0408Q6ZU52 694 aa12.96□□□□□ -0.33
CLK3-213ENST00000563842 NEK10Q6ZWH5 1172 aa12.96□□□□□ -0.33
CLK3-213ENST00000563842 VASH2Q86V25 355 aa12.96□□□□□ -0.33
CLK3-213ENST00000563842 N4BP2L2Q92802 583 aaPredicted RBP12.96□□□□□ -0.33
CLK3-213ENST00000563842 KCNJ9Q92806 393 aa12.96□□□□□ -0.33
CLK3-213ENST00000563842 CERS2Q96G23 380 aa12.96□□□□□ -0.33
CLK3-213ENST00000563842 ELMO2Q96JJ3 720 aa12.96□□□□□ -0.33
CLK3-213ENST00000563842 TRAPPC9Q96Q05 1148 aa12.96□□□□□ -0.33
CLK3-213ENST00000563842 ERP44Q9BS26 406 aa12.96□□□□□ -0.33
CLK3-213ENST00000563842 GPN2Q9H9Y4 310 aaPredicted RBP12.96□□□□□ -0.33
CLK3-213ENST00000563842 FAM114A2Q9NRY5 505 aa12.96□□□□□ -0.33
CLK3-213ENST00000563842 IARS2Q9NSE4 1012 aaKnown RBP12.96□□□□□ -0.33
CLK3-213ENST00000563842 ZC3H7BQ9UGR2 993 aaKnown RBP12.96□□□□□ -0.33
CLK3-213ENST00000563842 LNPEPQ9UIQ6 1025 aa12.96□□□□□ -0.33
CLK3-213ENST00000563842 SERTAD3Q9UJW9 196 aa12.96□□□□□ -0.33
CLK3-213ENST00000563842 NBEAQ8NFP9 2946 aa12.95□□□□□ -0.34
CLK3-213ENST00000563842 A0A0J9YY10 115 aa12.95□□□□□ -0.34
CLK3-213ENST00000563842 ERVH48-1M5A8F1 160 aa12.95□□□□□ -0.34
CLK3-213ENST00000563842 EIF3FO00303 357 aaPredicted RBP12.95□□□□□ -0.34
CLK3-213ENST00000563842 RASGRF2O14827 1237 aa12.95□□□□□ -0.34
CLK3-213ENST00000563842 VPS26AO75436 327 aa12.95□□□□□ -0.34
CLK3-213ENST00000563842 FKBP9O95302 570 aa12.95□□□□□ -0.34
CLK3-213ENST00000563842 C1orf105O95561 183 aa12.95□□□□□ -0.34
CLK3-213ENST00000563842 ENO3P13929 434 aaPredicted RBP12.95□□□□□ -0.34
CLK3-213ENST00000563842 ST6GAL1P15907 406 aa12.95□□□□□ -0.34
CLK3-213ENST00000563842 UGT2B7P16662 529 aa12.95□□□□□ -0.34
CLK3-213ENST00000563842 CD9P21926 228 aa12.95□□□□□ -0.34
CLK3-213ENST00000563842 KCNAB1Q14722 419 aa12.95□□□□□ -0.34
CLK3-213ENST00000563842 MSS51Q4VC12 460 aa12.95□□□□□ -0.34
CLK3-213ENST00000563842 ZNF789Q5FWF6 425 aa12.95□□□□□ -0.34
CLK3-213ENST00000563842 LRRC8EQ6NSJ5 796 aa12.95□□□□□ -0.34
CLK3-213ENST00000563842 GALNT7Q86SF2 657 aa12.95□□□□□ -0.34
CLK3-213ENST00000563842 C2CD4AQ8NCU7 369 aaPredicted RBP12.95□□□□□ -0.34
CLK3-213ENST00000563842 OR2L8Q8NGY9 312 aa12.95□□□□□ -0.34
CLK3-213ENST00000563842 INPP5DQ92835 1189 aa12.95□□□□□ -0.34
CLK3-213ENST00000563842 WBP1Q96G27 269 aa12.95□□□□□ -0.34
CLK3-213ENST00000563842 TCTN2Q96GX1 697 aa12.95□□□□□ -0.34
CLK3-213ENST00000563842 OR2A14Q96R47 310 aa12.95□□□□□ -0.34
CLK3-213ENST00000563842 CHRNA10Q9GZZ6 450 aa12.95□□□□□ -0.34
CLK3-213ENST00000563842 RAB17Q9H0T7 212 aa12.95□□□□□ -0.34
CLK3-213ENST00000563842 PPANQ9NQ55 473 aaKnown RBP12.95□□□□□ -0.34
CLK3-213ENST00000563842 INTS7Q9NVH2 962 aaKnown RBP12.95□□□□□ -0.34
CLK3-213ENST00000563842 WHRNQ9P202 907 aa12.95□□□□□ -0.34
CLK3-213ENST00000563842 PADI1Q9ULC6 663 aa12.95□□□□□ -0.34
CLK3-213ENST00000563842 PLAGL1Q9UM63 463 aa12.95□□□□□ -0.34
CLK3-213ENST00000563842 CHMP2BQ9UQN3 213 aa12.95□□□□□ -0.34
CLK3-213ENST00000563842 SNX24Q9Y343 169 aa12.95□□□□□ -0.34
CLK3-213ENST00000563842 DHRS7Q9Y394 339 aa12.95□□□□□ -0.34
CLK3-213ENST00000563842 UTP11Q9Y3A2 253 aaKnown RBP12.95□□□□□ -0.34
CLK3-213ENST00000563842 TEX264Q9Y6I9 313 aa12.95□□□□□ -0.34
CLK3-213ENST00000563842 EIF4E1BA6NMX2 242 aaKnown RBP12.94□□□□□ -0.34
CLK3-213ENST00000563842 ZNF839A8K0R7 811 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 ZNF891A8MT65 544 aaPredicted RBP12.94□□□□□ -0.34
CLK3-213ENST00000563842 CPNE3O75131 537 aaKnown RBP12.94□□□□□ -0.34
CLK3-213ENST00000563842 HAUS5O94927 633 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 MATN4O95460 622 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 CATP04040 527 aaKnown RBP12.94□□□□□ -0.34
CLK3-213ENST00000563842 TPBGLP0DKB5 382 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 MPC1LP0DKB6 136 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 CBSLP0DN79 551 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 ERVK-10P10266 1014 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 LIFP15018 202 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 CBSP35520 551 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 STAT5AP42229 794 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 SKIV2L2P42285 1042 aaKnown RBP12.94□□□□□ -0.34
CLK3-213ENST00000563842 RPL21P46778 160 aaKnown RBP12.94□□□□□ -0.34
CLK3-213ENST00000563842 CLCN7P51798 805 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 MC1RQ01726 317 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 C2orf54Q08AI8 447 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 CBLBQ13191 982 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 FRG1Q14331 258 aaKnown RBP12.94□□□□□ -0.34
CLK3-213ENST00000563842 GPR19Q15760 415 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 KLHL38Q2WGJ6 581 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 ACSBG2Q5FVE4 666 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 PWWP2BQ6NUJ5 590 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 FBXO38Q6PIJ6 1188 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 CNSTQ6PJW8 725 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 TIPARPQ7Z3E1 657 aaKnown RBP12.94□□□□□ -0.34
CLK3-213ENST00000563842 TMEM126BQ8IUX1 230 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 CNTN4Q8IWV2 1026 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 C19orf47Q8N9M1 422 aaKnown RBP12.94□□□□□ -0.34
CLK3-213ENST00000563842 GALNT6Q8NCL4 622 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 FAM136AQ96C01 138 aa12.94□□□□□ -0.34
CLK3-213ENST00000563842 ZNF501Q96CX3 271 aaPredicted RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms