RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 MAN2C1Q9NTJ4 1040 aa3.62□□□□□ -1.83
VPS13C-208ENST00000559119 ZNF701Q9NV72 531 aaPredicted RBP3.62□□□□□ -1.83
VPS13C-208ENST00000559119 ZHX1Q9UKY1 873 aaPredicted RBP3.62□□□□□ -1.83
VPS13C-208ENST00000559119 CORO1CQ9ULV4 474 aaPredicted RBP3.62□□□□□ -1.83
VPS13C-208ENST00000559119 PPP2R2CQ9Y2T4 447 aa3.62□□□□□ -1.83
VPS13C-208ENST00000559119 EPHB6O15197 1021 aa3.61□□□□□ -1.83
VPS13C-208ENST00000559119 RNASEH2AO75792 299 aaKnown RBP3.61□□□□□ -1.83
VPS13C-208ENST00000559119 TSFMP43897 325 aaKnown RBP3.61□□□□□ -1.83
VPS13C-208ENST00000559119 ZFP36L1Q07352 338 aaKnown RBP3.61□□□□□ -1.83
VPS13C-208ENST00000559119 KCNC3Q14003 757 aa3.61□□□□□ -1.83
VPS13C-208ENST00000559119 DHX8Q14562 1220 aaKnown RBP3.61□□□□□ -1.83
VPS13C-208ENST00000559119 PDLIM3Q53GG5 364 aaPredicted RBP3.61□□□□□ -1.83
VPS13C-208ENST00000559119 SLC25A53Q5H9E4 307 aa3.61□□□□□ -1.83
VPS13C-208ENST00000559119 MARCH9Q86YJ5 346 aa3.61□□□□□ -1.83
VPS13C-208ENST00000559119 OR13C3Q8NGS6 347 aa3.61□□□□□ -1.83
VPS13C-208ENST00000559119 ATP8B4Q8TF62 1192 aa3.61□□□□□ -1.83
VPS13C-208ENST00000559119 OSER1Q9NX31 292 aa3.61□□□□□ -1.83
VPS13C-208ENST00000559119 NDE1Q9NXR1 346 aa3.61□□□□□ -1.83
VPS13C-208ENST00000559119 CSNK1G3Q9Y6M4 447 aa3.61□□□□□ -1.83
VPS13C-208ENST00000559119 PIAS3Q9Y6X2 628 aa3.61□□□□□ -1.83
VPS13C-208ENST00000559119 MYO1GB0I1T2 1018 aa3.6□□□□□ -1.83
VPS13C-208ENST00000559119 SRRM5B3KS81 715 aa3.6□□□□□ -1.83
VPS13C-208ENST00000559119 PHOX2AO14813 284 aa3.6□□□□□ -1.83
VPS13C-208ENST00000559119 TMEM63AO94886 807 aa3.6□□□□□ -1.83
VPS13C-208ENST00000559119 SEC24AO95486 1093 aa3.6□□□□□ -1.83
VPS13C-208ENST00000559119 PRLRP16471 622 aa3.6□□□□□ -1.83
VPS13C-208ENST00000559119 MAZP56270 477 aaKnown RBP3.6□□□□□ -1.83
VPS13C-208ENST00000559119 KRTAP5-5Q701N2 237 aaPredicted RBP3.6□□□□□ -1.83
VPS13C-208ENST00000559119 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.6□□□□□ -1.83
VPS13C-208ENST00000559119 OR5M8Q8NGP6 311 aa3.6□□□□□ -1.83
VPS13C-208ENST00000559119 OR52N5Q8NH56 324 aa3.6□□□□□ -1.83
VPS13C-208ENST00000559119 MOSPD2Q8NHP6 518 aa3.6□□□□□ -1.83
VPS13C-208ENST00000559119 TOMM40LQ969M1 308 aa3.6□□□□□ -1.83
VPS13C-208ENST00000559119 C10orf90Q96M02 699 aa3.6□□□□□ -1.83
VPS13C-208ENST00000559119 SEC62Q99442 399 aaKnown RBP3.6□□□□□ -1.83
VPS13C-208ENST00000559119 BTBD10Q9BSF8 475 aa3.6□□□□□ -1.83
VPS13C-208ENST00000559119 LMF2Q9BU23 707 aaKnown RBP3.6□□□□□ -1.83
VPS13C-208ENST00000559119 FNDC11Q9BVV2 318 aa3.6□□□□□ -1.83
VPS13C-208ENST00000559119 RTN4RQ9BZR6 473 aa3.6□□□□□ -1.83
VPS13C-208ENST00000559119 A0A1W2PR80 420 aa3.59□□□□□ -1.83
VPS13C-208ENST00000559119 FRMD3A2A2Y4 597 aa3.59□□□□□ -1.83
VPS13C-208ENST00000559119 GLRA3O75311 464 aa3.59□□□□□ -1.83
VPS13C-208ENST00000559119 VTNP04004 478 aa3.59□□□□□ -1.83
VPS13C-208ENST00000559119 THEGLP0DJG4 465 aa3.59□□□□□ -1.83
VPS13C-208ENST00000559119 SLC2A2P11168 524 aaPredicted RBP3.59□□□□□ -1.83
VPS13C-208ENST00000559119 GUCY2DQ02846 1103 aa3.59□□□□□ -1.83
VPS13C-208ENST00000559119 TNIP1Q15025 636 aa3.59□□□□□ -1.83
VPS13C-208ENST00000559119 RNF212Q495C1 297 aa3.59□□□□□ -1.83
VPS13C-208ENST00000559119 PHLDA2Q53GA4 152 aa3.59□□□□□ -1.83
VPS13C-208ENST00000559119 LCN1P1Q5VSP4 162 aa3.59□□□□□ -1.83
VPS13C-208ENST00000559119 TMTC3Q6ZXV5 915 aa3.59□□□□□ -1.83
VPS13C-208ENST00000559119 RTN4RL2Q86UN3 420 aa3.59□□□□□ -1.83
VPS13C-208ENST00000559119 ABHD12Q8N2K0 398 aa3.59□□□□□ -1.83
VPS13C-208ENST00000559119 METTL4Q8N3J2 472 aa3.59□□□□□ -1.83
VPS13C-208ENST00000559119 PAPD5Q8NDF8 572 aaKnown RBP3.59□□□□□ -1.83
VPS13C-208ENST00000559119 CCDC107Q8WV48 283 aa3.59□□□□□ -1.83
VPS13C-208ENST00000559119 PDLIM5Q96HC4 596 aaKnown RBP3.59□□□□□ -1.83
VPS13C-208ENST00000559119 PGAM5Q96HS1 289 aa3.59□□□□□ -1.83
VPS13C-208ENST00000559119 TBATAQ96M53 351 aa3.59□□□□□ -1.83
VPS13C-208ENST00000559119 FAM49AQ9H0Q0 323 aaPredicted RBP3.59□□□□□ -1.83
VPS13C-208ENST00000559119 MUC13Q9H3R2 512 aa3.59□□□□□ -1.83
VPS13C-208ENST00000559119 GNB4Q9HAV0 340 aa3.59□□□□□ -1.83
VPS13C-208ENST00000559119 SPHK1Q9NYA1 384 aa3.59□□□□□ -1.83
VPS13C-208ENST00000559119 CELA1Q9UNI1 258 aa3.59□□□□□ -1.83
VPS13C-208ENST00000559119 TNNQ9UQP3 1299 aa3.59□□□□□ -1.83
VPS13C-208ENST00000559119 GRIP1Q9Y3R0 1128 aa3.59□□□□□ -1.83
VPS13C-208ENST00000559119 DCAF1Q9Y4B6 1507 aa3.59□□□□□ -1.84
VPS13C-208ENST00000559119 XRCC3O43542 346 aa3.58□□□□□ -1.84
VPS13C-208ENST00000559119 CDK2AP2O75956 126 aa3.58□□□□□ -1.84
VPS13C-208ENST00000559119 IGHEP01854 428 aa3.58□□□□□ -1.84
VPS13C-208ENST00000559119 GABRB1P18505 474 aa3.58□□□□□ -1.84
VPS13C-208ENST00000559119 HLA-FP30511 346 aa3.58□□□□□ -1.84
VPS13C-208ENST00000559119 TPD52P55327 224 aaPredicted RBP3.58□□□□□ -1.84
VPS13C-208ENST00000559119 CRYMQ14894 314 aa3.58□□□□□ -1.84
VPS13C-208ENST00000559119 XKR3Q5GH77 459 aa3.58□□□□□ -1.84
VPS13C-208ENST00000559119 PXKQ7Z7A4 578 aa3.58□□□□□ -1.84
VPS13C-208ENST00000559119 KCNMB4Q86W47 210 aa3.58□□□□□ -1.84
VPS13C-208ENST00000559119 ARHGAP24Q8N264 748 aa3.58□□□□□ -1.84
VPS13C-208ENST00000559119 AFAP1Q8N556 730 aa3.58□□□□□ -1.84
VPS13C-208ENST00000559119 OR2AJ1Q8NGZ0 328 aa3.58□□□□□ -1.84
VPS13C-208ENST00000559119 CHPT1Q8WUD6 406 aa3.58□□□□□ -1.84
VPS13C-208ENST00000559119 CYYR1Q96J86 154 aa3.58□□□□□ -1.84
VPS13C-208ENST00000559119 CEP295NLQ96MC4 621 aa3.58□□□□□ -1.84
VPS13C-208ENST00000559119 NKX3-1Q99801 234 aaPredicted RBP3.58□□□□□ -1.84
VPS13C-208ENST00000559119 OR2B2Q9GZK3 357 aa3.58□□□□□ -1.84
VPS13C-208ENST00000559119 MIS12Q9H081 205 aa3.58□□□□□ -1.84
VPS13C-208ENST00000559119 DPAGT1Q9H3H5 408 aa3.58□□□□□ -1.84
VPS13C-208ENST00000559119 IRAK4Q9NWZ3 460 aa3.58□□□□□ -1.84
VPS13C-208ENST00000559119 DAPK2Q9UIK4 370 aa3.58□□□□□ -1.84
VPS13C-208ENST00000559119 TMEM98Q9Y2Y6 226 aa3.58□□□□□ -1.84
VPS13C-208ENST00000559119 A0A1B0GVC2 190 aa3.57□□□□□ -1.84
VPS13C-208ENST00000559119 A0A1W2PR77 199 aa3.57□□□□□ -1.84
VPS13C-208ENST00000559119 A8MXK9 166 aa3.57□□□□□ -1.84
VPS13C-208ENST00000559119 PI4K2BG5E9Z4 385 aa3.57□□□□□ -1.84
VPS13C-208ENST00000559119 RB1P06400 928 aa3.57□□□□□ -1.84
VPS13C-208ENST00000559119 CENPBP07199 599 aaPredicted RBP3.57□□□□□ -1.84
VPS13C-208ENST00000559119 CDH3P22223 829 aa3.57□□□□□ -1.84
VPS13C-208ENST00000559119 IL4RP24394 825 aa3.57□□□□□ -1.84
VPS13C-208ENST00000559119 MTHFRP42898 656 aa3.57□□□□□ -1.84
VPS13C-208ENST00000559119 TRA2BP62995 288 aaKnown RBP3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms